Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242206g00001 ATGGCATCATCGGAGGCAGCAACCATGAAGGTTAATGGTAATTCTCCCAACAACAACAACAACAACAACTCTTCGGAGCTGAACAACAATGTTCATTCTTCATCTTCTTTACCCACCTCACCCAAAGACGCGGAAGCTGCACTCTACAGGGAGCTATGGCATGCGTGTGCAGGTCCTCTTGTTACAGTTCCAAGAGAAGGAGAGAGAGTTTTCTATTTCCCTCAGGGACACATAGAGCAGGTGGAGGCGTCAACCAATCAGGTGGCTGACCAACACATGCCTGTGTACGATCTTCCTTCTAAGATCTTATGTCGGGTCATCAACGTGCAGCTCAAGGCGGAGCCCGACACGGATGAGGTGTTTGCTCAGATTACCTTGCTTCCAGAGCAAAATCAAGACGAGAATGCGGCTGAGAAAGAGCCTCCACTGCCGCCACCTCCACGATTCCATGTACATTCGTTCTGTAAGACACTGACCGCCTCTGATACAAGCACCCACGGTGGGTTTTCCGTTCTTAGGCGGCATGCTGACGAGTGCCTTCCTCCCCTGGATATGTCAAAGCAGCCGCCTACCCAGGAATTGGTGGCAAAAGATTTGCATGGGAATGAATGGCGATTTAGACACATATTCCGAGGTCAACCCCGGAGGCACTTGCTTCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTAGTTGCTGGGGATGCTTTCATATTCTTAAGAGGTGAGAATGGGGAGCTTCGTGTGGGCGTCCGGAGAGCAATGAGACAGCAGGGGAATGTCCCATCGTCGGTTATTTCTAGCCATAGTATGCATCTGGGGGTTCTTGCAACTGCTTGGCATGCCATCTTGACCGGGACCATATTCACAGTTTATTATAAACCGAGGACTAGTCCTGCTGAGTTCATTGTTCCATATGACCAATATATGGAATCTCTAAAAAATAACTACACCATAGGGATGCGGTTTAAAATGAGGTTTGAGGGTGAAGAGGCTCCAGAACAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATTCTGATGCAAAAAGGTGGCCTGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACATTCCCCGTCCTGAGAGGGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTATGAACCCTCTTTCAATGCCCAGGGCTAAAAGACCTCGATCTAATGTACCAATTCAATCATCCCAGGATTCTTCTGTTCTAACTCGAGAAGCATCATCTAAAGTAAGTGCAGACCCTTTACCAGCAAATGGATTCCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGTGGCAATTTCGCAGAAAGTACCGAGTCTGACACAGCTGAGAAGTCTGCTGTTTGGCCACCTGTAGATGATGAGAAGGTTGATGTTGTTTCAATGTCACGGAGGTATGGTTCGGAGAACTGGATGTCAATGGGAAGGCATGACACGGCCTATTCAGATCTTCTTTCAGGGTTTGGGTCCGGCGGAGATCCTTCGCATCCTTCCTTGGTAGACCAAATGGGTGGACCCGTAGCCTATTCCGCCAGAAAGCACATGTTAGATCATGAAGGCAAACTTAATGTGCCTCATCCGTGGCCAGTAATGCCCTCGGGTCTTTCGTTAAACTTCTTGGAGCCTAGTTTGAAAGGTTCTCCACACGGCGGCGAAACACCTTACCAAGCTCGAGGGAATACGAGGTACGGAGCATTCAGTGGATATTCCATTGTTCATAGTCACAAAGCTGAGCATCCACATGGAAACATGATGCCACCACCACCCCCAACTCAATATGAGAGTCCCTGCTCAAGAGACATGTCCAAATCAATGTCAGCAAAATCCTATGAGACTGCGAAACCAAAAGAAGGTGACTGTAAGCTATTCGGCATCTCACTTATCAGTAGTCCTAGTGCTGCACCGGAGCCTTCTGTATCACATAGAAATGTGACGAATGAGCCAGCTGGTCAAGGACATCTCAAATCACACCACCAACGCACTTCCGAAAATGATCAGAAAACAGAACAATATAAGGTTTTGAAATCGACAGATGGTCCGGTTGTCATTGATGACCATGACAAGCTGGCAAAAACTTCCCAGGTGCATCATAAAGATGGTCAGGCCAAACCACAAGGCAGCTCTGCTAGGAGTTGCACTAAAGTCCACAAAAAGGGGATTGCGCTTGGTAGGTCCGTGGACCTGACAAAATACAGCAACTACGATGATTTGGTTGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTAATGTCAGCAAAAAAGGATTGGCTTATCGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGGGATGATCCATGGCAAGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCACAGGTACCTTAAGTTCAAGAAATGAAGAGAATCATTCAGCTAGTGAAGGAGCTGAGGCAAAAGAAGTTAAAAGTCAGCTGCACCAGAAGTTAAATTCAGAAAGTGTGGCTACGGTCCANNNNNNNNNNTTACTTTTAGCTTCCAGGTAA 2598 0.4692 MASSEAATMKVNGNSPNNNNNNNSSELNNNVHSSSSLPTSPKDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVQLKAEPDTDEVFAQITLLPEQNQDENAAEKEPPLPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDAKRWPESKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPAMNPLSMPRAKRPRSNVPIQSSQDSSVLTREASSKVSADPLPANGFPRVLQGQEFSTLRGNFAESTESDTAEKSAVWPPVDDEKVDVVSMSRRYGSENWMSMGRHDTAYSDLLSGFGSGGDPSHPSLVDQMGGPVAYSARKHMLDHEGKLNVPHPWPVMPSGLSLNFLEPSLKGSPHGGETPYQARGNTRYGAFSGYSIVHSHKAEHPHGNMMPPPPPTQYESPCSRDMSKSMSAKSYETAKPKEGDCKLFGISLISSPSAAPEPSVSHRNVTNEPAGQGHLKSHHQRTSENDQKTEQYKVLKSTDGPVVIDDHDKLAKTSQVHHKDGQAKPQGSSARSCTKVHKKGIALGRSVDLTKYSNYDDLVAELDQLFEFGGELMSAKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSTGTLSSRNEENHSASEGAEAKEVKSQLHQKLNSESVATVXXXXLLLASR 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242206g00001 865 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 128 148 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 817 843 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 593 630 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 828 843 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 384 437 - -
Stsc242206g00001 865 SUPERFAMILY CAD & PB1 domains 728 804 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 404 422 - -
Stsc242206g00001 865 FunFam Auxin response factor 152 256 - -
Stsc242206g00001 865 CDD B3_DNA 152 254 IPR003340 GO:0003677
Stsc242206g00001 865 SMART B3_2 154 256 IPR003340 GO:0003677
Stsc242206g00001 865 Pfam AUX/IAA family 706 809 IPR033389 -
Stsc242206g00001 865 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 816 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc242206g00001 865 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Stsc242206g00001 865 ProSiteProfiles PB1 domain profile. 727 809 IPR000270 GO:0005515
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 1 42 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 648 669 - -
Stsc242206g00001 865 Gene3D - 317 387 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 612 626 - -
Stsc242206g00001 865 FunFam Auxin response factor 317 389 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 670 689 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 1 41 - -
Stsc242206g00001 865 SUPERFAMILY DNA-binding pseudobarrel domain 150 283 IPR015300 -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 707 726 - -
Stsc242206g00001 865 MobiDBLite consensus disorder prediction 648 695 - -
Stsc242206g00001 865 Gene3D - 723 816 - -
Stsc242206g00001 865 Pfam Auxin response factor 280 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc242206g00001 865 Gene3D - 151 256 IPR015300 -
Stsc242206g00001 865 FunFam Auxin response factor 722 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242206g00001 Stsc-Chr242206 31794 36654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242206g00001 43 849 B3 DNA Binding Superfamily AT5G62000 65.818 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc242206g00001 AUX_IAA 1.4e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242206g00001 - - aip:107612759 1530.38