Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242205g00001 ATGGCATTGTGTAACAAGCTTGGAAATTTACTGAGACAGAGTGCTCCCCGAAGTGGATCATCCATGCTCAATTATATTCGCTGCATGTCCTCAAGCAGGCTTTTTATTGGGGGCCTTTCATATGGAGTTGATGACCAGTGTCTTAAGGATGCATTCTCCGGCTTTGGCGACGTGGTTGATGCAAGGGTGGTCACTGATAGAGACACCGGAAGATCAAGAGGTTTTGGATTTGTTAACTTCTCAAGCGACGAGTCTGCTGGCTCAGCTCTCTCTGCGATGGACGGGCAGGATCTAAACGGCCGAGTGATTAGGGTGAGCTATGCAAATGATAGGCCACCTCGAGGTGGTGGTGGTGGTTACGGTGGTGGTGGTGGTGGTTACGGTGGAGGTGGTTATCGTAGAGGTGGAGGTGGAGGTGGTGGTTATGGTGATCCATCTTTCTAG 444 0.5045 MALCNKLGNLLRQSAPRSGSSMLNYIRCMSSSRLFIGGLSYGVDDQCLKDAFSGFGDVVDARVVTDRDTGRSRGFGFVNFSSDESAGSALSAMDGQDLNGRVIRVSYANDRPPRGGGGGYGGGGGGYGGGGYRRGGGGGGGYGDPSF 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242205g00001 147 Gene3D - 26 144 IPR012677 -
Stsc242205g00001 147 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 142 - -
Stsc242205g00001 147 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Stsc242205g00001 147 SMART rrm1_1 33 106 IPR000504 GO:0003723
Stsc242205g00001 147 FunFam Glycine-rich RNA-binding protein 2 21 145 - -
Stsc242205g00001 147 SUPERFAMILY RNA-binding domain, RBD 29 141 IPR035979 GO:0003676
Stsc242205g00001 147 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Stsc242205g00001 147 CDD RRM2_NsCP33_like 33 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242205g00001 Stsc-Chr242205 12840 15060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242205g00001 7 114 Eukaryotic Initiation Factors Gene Family AT2G23350 29.630 4.37e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242205g00001 - - gmx:100527220 181.415