Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242201g00004 ATGGGTGTTCTTGGTATTATCTTTCTTGTGGTGCTATATTTTTGTATGGTCTCACAACAAGTCCTTGGATATGGAAATTGGATCAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGAACAATGGGTGGTGCTTGTGGATATGGAAACTTATATAGCAGTGGATATGGAACAAATACAGCAGCACTAAGCACAGCACTATTCAACAATGGATTAGCATGTGGAGCATGCTACGAAATAAAGTGTGCAAATGACCCACAATGGTGTCTTCCAGGCTCCATTGTAGTAACTGCAACCAATTTCTGTCCTCCTGGTGGATGGTGTGATCCTCCAAATCACCATTTTGATCTCTCTCAACCTATTTTCCAGCACATAGCTCAATACAAAGCTGGAATTGTACCTGTTGTTTACAGAAGGGTAAGGTGCAGGAGAAGGGGTGGAATAAGGTTTACCATTAATGGACACTCGTACTTCAATCTGGTGCTAGTGACAAATGTGGGAGGTGCTGGGGATGTGAATGCTGTGGCCATTAAAGGGTCAAGAACAAGATGGCAAGCCATGTCAAGGAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTTAATGGGCAAAGCCTTTCTTTTATAGTCACCACAAGTAATGGACACAAGGTTCTCTCTTATAATGTTGCCCCACCCAATTGGTCCTTTGGCCAGACCTACACTGGAAGGCAATTCAACTACTAA 732 0.4331 MGVLGIIFLVVLYFCMVSQQVLGYGNWINAHATFYGGSDASGTMGGACGYGNLYSSGYGTNTAALSTALFNNGLACGACYEIKCANDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVNAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFIVTTSNGHKVLSYNVAPPNWSFGQTYTGRQFNY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242201g00004 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Stsc242201g00004 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Stsc242201g00004 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Stsc242201g00004 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Stsc242201g00004 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Stsc242201g00004 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Stsc242201g00004 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Stsc242201g00004 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Stsc242201g00004 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Stsc242201g00004 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Stsc242201g00004 243 FunFam Expansin 16 145 - -
Stsc242201g00004 243 PANTHER EXPANSIN-A15 8 241 IPR002963 GO:0009664
Stsc242201g00004 243 Gene3D - 14 145 IPR036908 -
Stsc242201g00004 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Stsc242201g00004 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Stsc242201g00004 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Stsc242201g00004 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Stsc242201g00004 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Stsc242201g00004 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Stsc242201g00004 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Stsc242201g00004 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Stsc242201g00004 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Stsc242201g00004 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Stsc242201g00004 243 Gene3D - 149 241 IPR036749 -
Stsc242201g00004 243 CDD DPBB_EXPA_N 27 134 - -
Stsc242201g00004 243 SUPERFAMILY PHL pollen allergen 146 238 IPR036749 -
Stsc242201g00004 243 FunFam Expansin 149 241 - -
Stsc242201g00004 243 SMART dpbb_1 62 139 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242201g00004 Stsc-Chr242201 9503 11145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242201g00004 1 241 Expansin Gene Family AT2G03090 74.400 1.26e-136 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242201g00004 K20628 - gmx:100791784 434.106