Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242199g00002 ATGGCTCTTCACCATCCACACCTTTTATTGCTAGACACAAGTTCAAGCTTTGGTGATGCAAATAGGACAAAAGATTCCTCCATAGGCGACCCAAATTTCGACACCAACATGGTGATTATCTTGGCTGCCCTGCTCTGTGCACTCATATGTGCTTTGGGGCTCAACTCAATAGTGCGTTGTGCTCTAAGATGTAGCCGAAGGTTGGCTTTCGAGACTCCGGACGAAGCAGCAGCGCGATTATCGGTTAAAGGTTTGAAGAAGAGTGCTTTGCATCAGATTCCTATAGTTGTTTATGGTAATTCAGGTTCTAGTAGTAGTAGTAGTAGTGTTAAAGCCACTGATTGTGCAATTTGCCTAGGGGAGTTTATGAATGGAGAAAAGGTTAGAGTGCTACCAAAATGTAACCATGGATTCCATGTTAAGTGTATAGATACATGGCTGCAATCACACTCCTCTTGCCCTACTTGTAGAAGGTGTTTGCTTGAGCAACCAGCAACAGCTTCTGAAGTTGCAATTGTGGCTGCAGCTTCAGGAACAAGGAATCATCATGCTGATAATAATGCATCAGAGGGGCATCAACCTGATCATGTAGCTGTACTTGTGGATGACATTGGCTAG 618 0.4401 MALHHPHLLLLDTSSSFGDANRTKDSSIGDPNFDTNMVIILAALLCALICALGLNSIVRCALRCSRRLAFETPDEAAARLSVKGLKKSALHQIPIVVYGNSGSSSSSSSVKATDCAICLGEFMNGEKVRVLPKCNHGFHVKCIDTWLQSHSSCPTCRRCLLEQPATASEVAIVAAASGTRNHHADNNASEGHQPDHVAVLVDDIG 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242199g00002 205 PANTHER RING-H2 FINGER PROTEIN ATL78 25 179 IPR044602 GO:0016567|GO:0016740
Stsc242199g00002 205 CDD RING-H2_EL5-like 114 157 - -
Stsc242199g00002 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Stsc242199g00002 205 FunFam E3 ubiquitin-protein ligase ATL6 74 163 - -
Stsc242199g00002 205 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Stsc242199g00002 205 SMART ring_2 115 156 IPR001841 -
Stsc242199g00002 205 Pfam Ring finger domain 114 157 IPR001841 -
Stsc242199g00002 205 SUPERFAMILY RING/U-box 114 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242199g00002 Stsc-Chr242199 13509 14930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242199g00002 7 165 C3H Transcription Factor Family AT3G10910 56.471 9.39e-56 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242199g00002 - K19040 gmx:100787273 250.366