Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242198g00002 ATGGTTCGCTCCAATGGCGTCAGGCTCCTTGACTGGGCTGCTCGTCGATCACTCTATAACTCCAAGGATTCCGTGTATCAATCAGCGTTTCAAAGGGGCTATAGGGTACTGAATTTAGGGCCTCGCAATCCATCCAAAACTTTTGGAATTTGTGGTCCAGTTGGAGATGGTTTAAATTTGAAGAACTGGTTGCAACTGGGAGCTACAAATACCTATTTGGGGTCATCTAGAACAATTCATGGCTCTGCTTCATTGTGTAGAGACTATTATGATGTTCTTGGTGTGAGTAGGAATGCAAGTGCTTCTGATATAAAGAAGGCTTACTATGGGCTAGCAAAGAAGCTCCATCCAGATACAAACAAAAATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTACTATTGCATATGAGGTGTTGAGGGATGAAGAAAAGCGTCAACAGTATGATCAGGTTGGCCATGATGCCTATGTGAACCAACAGTCTGCTGGTTTTGAAGGAGGCCAGAGTGGCTTTAATCCATTTGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTTTTCCACCAGAATATTGGTGGCGAGGATATCAAGACTGCCATTGAATTATCCTTTATGGAAGCTGTCCAAGGGTGCACCAAAACTGTGACATTTCCAGCAGATGTTGTGTGTAATACCTGTGGTGGGACTGGTGTTCCTCCTGGTGTAAGACCTGAAACCTGTAAAAGATGTAAGGGGTCAGGGGTGACATACGTACAAGCTGGCATATTTAGGATGGAGAGTACTTGTGGTGCATGTAAGGGAACTGGAAAAATTGTATCGGAGTTTTGCAAGTCTTGCAGGGGCACGAAGGTTATCAGAGGAACAAAGACTGTCAAGTTGGATATTATGCCTGGGATTGACACCAATGAGACCATTAGGGTTTATGGAAGCGGTGGAGCAGATCCTGATGGAGGTCAAACTGGAGATCTTTATGTTACTATTAAGGTTCGGGAAGACCCTGTTTTCCGTAGAGAAGGATCTGACATTCATGTTGATGCTGTTTTAAGTATGACTCAGGCAATTTTAGGGGGAAGCATTCAGGTTCCAACCCTTACTGGAGATGTTGTTCTTAAGGTTTGGCCTGGCACCCAACCTGGTCAAAAAGTGGTTTTGAAAAATAAAGGGATCAAGACAAAGAATTCTTACACATATGGCAATCAATATGTTCATTTTAATGTCAGCATTCCAACAAACCTAACACCAAGACAGCGCGAATTGATTGGAGAATTCGCTAGGGAAGAGCAAGAGGAATCCGATAAACGCAGAACTGCATCTGCTTCTGGCTAA 1332 0.4332 MVRSNGVRLLDWAARRSLYNSKDSVYQSAFQRGYRVLNLGPRNPSKTFGICGPVGDGLNLKNWLQLGATNTYLGSSRTIHGSASLCRDYYDVLGVSRNASASDIKKAYYGLAKKLHPDTNKNDPEAEKKFQEVTIAYEVLRDEEKRQQYDQVGHDAYVNQQSAGFEGGQSGFNPFEQIFRDHDFVKSFFHQNIGGEDIKTAIELSFMEAVQGCTKTVTFPADVVCNTCGGTGVPPGVRPETCKRCKGSGVTYVQAGIFRMESTCGACKGTGKIVSEFCKSCRGTKVIRGTKTVKLDIMPGIDTNETIRVYGSGGADPDGGQTGDLYVTIKVREDPVFRREGSDIHVDAVLSMTQAILGGSIQVPTLTGDVVLKVWPGTQPGQKVVLKNKGIKTKNSYTYGNQYVHFNVSIPTNLTPRQRELIGEFAREEQEESDKRRTASASG 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242198g00002 443 Hamap Chaperone protein DnaJ [dnaJ]. 85 438 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc242198g00002 443 Pfam DnaJ C terminal domain 198 411 IPR002939 -
Stsc242198g00002 443 CDD DnaJ_C 196 414 - -
Stsc242198g00002 443 FunFam Chaperone protein dnaJ GFA2, mitochondrial 85 197 - -
Stsc242198g00002 443 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 212 288 IPR036410 -
Stsc242198g00002 443 Gene3D DnaJ domain 86 196 IPR036869 -
Stsc242198g00002 443 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 63 434 - -
Stsc242198g00002 443 CDD DnaJ_zf 225 285 IPR001305 GO:0031072|GO:0051082
Stsc242198g00002 443 SUPERFAMILY Chaperone J-domain 87 190 IPR036869 -
Stsc242198g00002 443 Pfam DnaJ domain 88 150 IPR001623 -
Stsc242198g00002 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 336 422 IPR008971 GO:0006457|GO:0051082
Stsc242198g00002 443 ProSiteProfiles Zinc finger CR-type profile. 212 290 IPR001305 GO:0031072|GO:0051082
Stsc242198g00002 443 Pfam DnaJ central domain 225 285 IPR001305 GO:0031072|GO:0051082
Stsc242198g00002 443 SUPERFAMILY HSP40/DnaJ peptide-binding domain 195 334 IPR008971 GO:0006457|GO:0051082
Stsc242198g00002 443 PRINTS DnaJ domain signature 108 123 IPR001623 -
Stsc242198g00002 443 PRINTS DnaJ domain signature 145 164 IPR001623 -
Stsc242198g00002 443 PRINTS DnaJ domain signature 90 108 IPR001623 -
Stsc242198g00002 443 PRINTS DnaJ domain signature 125 145 IPR001623 -
Stsc242198g00002 443 ProSitePatterns Nt-dnaJ domain signature. 130 149 IPR018253 -
Stsc242198g00002 443 CDD DnaJ 88 142 IPR001623 -
Stsc242198g00002 443 SMART dnaj_3 87 145 IPR001623 -
Stsc242198g00002 443 ProSiteProfiles dnaJ domain profile. 88 153 IPR001623 -
Stsc242198g00002 443 FunFam Chaperone protein dnaJ 1, mitochondrial 332 439 - -
Stsc242198g00002 443 Gene3D - 197 330 - -
Stsc242198g00002 443 Gene3D - 332 441 - -
Stsc242198g00002 443 FunFam Molecular chaperone DnaJ 217 290 - -
Stsc242198g00002 443 Gene3D - 217 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242198g00002 Stsc-Chr242198 6012 12002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242198g00002 81 150 C2H2 Transcription Factor Family AT1G74250 40.000 2.26e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242198g00002 K03686 - gmx:100799735 736.487