Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242196g00004 ATGGCAGCTCCTATCCTTCTTCGTTCTCTCTACTCTTCCACAAGAAAATCCGCATCTTCCTTTTACCGTTCCACTTCTCCTTCCCTGTATTCTTCTTTTACTTCTTTTTATTCTTCTTCTTCTTCTTCTAGATCCTTCCTCCACCGATTCAGTTACTTCTCACGCGCCTTCTCTGCCGCCGCTCCCTCCCCTTCCGCCGCCACATCTGCAACTTCCCCCTGCGGCGCACTTGACCCCAGCCGCCTCCGCAACGTCGCTGTCATTGCGCACGTCGACCATGGCAAGACCACGCTCATGGATCGCCTTCTCCGCCAGTGCGGCGCGGATATCCCACACGAGCGCGCCATGGATTCCATCACGCTTGAGCGCGAGCGTGGAATCACCATCGCCTCCAAGGTTACGTCTATTTCGTGGAAAGAGAATGAGCTGAACATGGTTGATACTCCAGGACATGCTGATTTTGGTGGCGAAGTTGAACGTGTTGTTGGTATGGTTGAAGGGGCTGTTTTGGTTGTTGATGCCGGTGAAGGTCCACTTGCTCAAACAAAATTCGTTCTTGCTAAAGCCTTAAAGTATGGATTGCGACCTATTCTTTTGCTAAACAAAGTTGACCGCCCTGCAGTTACTGAGGAGATGTGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTAGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCTACCACGTTTACCAAGGATCCTCCTGCTGAGTTAAAAAATATGTCAGAATTGCTTGATGCCATTGTTTCACATGTCCCACCACCAAATGCTAACACTGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAAAAGGACTTCTATCTTGGTCGAATTTTAACTGGACGCGTATATACTGGTGTTGTTCGTGTTGGTGACAGGGTTCATGGATTACGTAATAAGGACTCTGTTGCTGAAAAGATTGAAGATGGAAAGGTTGTGAAACTGATGAAAAAGAAGGGCACGAACATGGTTCTAACAGAATGTGCTGGAGCTGGTGATATAATTTCAATGGCTGGCTTGGCAACTCCATCAATAGGCCACACAGTGGCAACAGCAGAGGTTATGTCAGTATTACCCACAGTTGAATTGGATCCTCCTACAATTTCCATGACTTTTGGTGTAAATGACTCCCCATTGGCTGGTCGAGATGGTACTCATTTGACTGGAGGAAGAATTGGTGATCGACTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTTCTTCCTGGCTTATCAGAATCATTTGAGGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATCCTGATTGAGAACATGAGACGCGAGGGATTTGAATTATCTGTGTCTCCACCTAAAGTGATGTATAAAACTGAAAATGGTCAGAGACTTGAGCCCATAGAAGAAGTAACAATTGAGGTAAATGATGAGCATGTTGGATTGGTAATGGAAGCCTTGTCTCACAGGCGAGCTGAGGTCACGGACATGGGTCCTGTGTCAGGAGCTGTTGGTCGGACTAGACTGACTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGTAGTGACACTCGTGGAACTGGATTCATGCATCGAGCTTTCCTTTCATATGAAAAATTTCGAGGACCTCTTGGCAATGTTAGAAAAGGAGTACTGGTCTCAATGGGTTTTGGTACAATCACAGCTCATGCATTGATGAGCTTAGAAGCACGTGGGATTCTTTTTGTATCTCCTGGAATGGAGGCATATGATGGGATGATTGTTGGAGAACATTCACGGGACACAGATCTTGATGTCAATCCAGTGAGAGCTAAAGAGCTTACAAATATCCGTGCTGCTACCAAGGATGAGAATGTGAAGCTGTCTCCCCCACGTCTTATGACGCTTGAAGAAGCTATAGGTTATGTGGCTTCTGATGAGCTTATTGAGGTTAGTTTTAGCTCATGA 2007 0.4639 MAAPILLRSLYSSTRKSASSFYRSTSPSLYSSFTSFYSSSSSSRSFLHRFSYFSRAFSAAAPSPSAATSATSPCGALDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITIASKVTSISWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEMCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAELKNMSELLDAIVSHVPPPNANTDAPFQMLVSMMEKDFYLGRILTGRVYTGVVRVGDRVHGLRNKDSVAEKIEDGKVVKLMKKKGTNMVLTECAGAGDIISMAGLATPSIGHTVATAEVMSVLPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQRLEPIEEVTIEVNDEHVGLVMEALSHRRAEVTDMGPVSGAVGRTRLTLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLSYEKFRGPLGNVRKGVLVSMGFGTITAHALMSLEARGILFVSPGMEAYDGMIVGEHSRDTDLDVNPVRAKELTNIRAATKDENVKLSPPRLMTLEEAIGYVASDELIEVSFSS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242196g00004 668 PRINTS GTP-binding elongation factor signature 144 154 IPR000795 GO:0003924|GO:0005525
Stsc242196g00004 668 PRINTS GTP-binding elongation factor signature 84 97 IPR000795 GO:0003924|GO:0005525
Stsc242196g00004 668 PRINTS GTP-binding elongation factor signature 160 171 IPR000795 GO:0003924|GO:0005525
Stsc242196g00004 668 PRINTS GTP-binding elongation factor signature 124 132 IPR000795 GO:0003924|GO:0005525
Stsc242196g00004 668 PRINTS GTP-binding elongation factor signature 196 205 IPR000795 GO:0003924|GO:0005525
Stsc242196g00004 668 SUPERFAMILY Translation proteins 227 382 IPR009000 -
Stsc242196g00004 668 FunFam GTP-binding protein TypA 567 653 - -
Stsc242196g00004 668 Pfam Elongation factor Tu GTP binding domain 81 275 IPR000795 GO:0003924|GO:0005525
Stsc242196g00004 668 CDD BipA_III 389 466 IPR047043 -
Stsc242196g00004 668 FunFam Elongation factor family protein 279 383 - -
Stsc242196g00004 668 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 117 132 IPR031157 -
Stsc242196g00004 668 SUPERFAMILY EF-G C-terminal domain-like 481 597 IPR035647 -
Stsc242196g00004 668 FunFam GTP-binding protein TypA 81 278 - -
Stsc242196g00004 668 CDD BipA_TypA_II 285 382 IPR047042 -
Stsc242196g00004 668 CDD BipA_TypA_C 481 561 IPR035651 -
Stsc242196g00004 668 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 79 252 - -
Stsc242196g00004 668 Pfam Elongation factor G C-terminus 480 562 IPR000640 -
Stsc242196g00004 668 Gene3D Elongation Factor G (Translational Gtpase), domain 3 390 665 - -
Stsc242196g00004 668 CDD TypA_BipA 82 277 IPR047041 -
Stsc242196g00004 668 Gene3D - 472 566 - -
Stsc242196g00004 668 NCBIfam small GTP-binding protein domain 83 220 IPR005225 GO:0005525
Stsc242196g00004 668 NCBIfam translational GTPase TypA/BipA 82 665 IPR006298 GO:0003924|GO:0005525
Stsc242196g00004 668 SUPERFAMILY EF-G C-terminal domain-like 387 470 IPR035647 -
Stsc242196g00004 668 Gene3D bipa protein 567 647 IPR042116 -
Stsc242196g00004 668 Pfam Elongation factor Tu domain 2 299 372 IPR004161 GO:0005525
Stsc242196g00004 668 Gene3D - 80 278 IPR027417 -
Stsc242196g00004 668 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 80 278 IPR000795 GO:0003924|GO:0005525
Stsc242196g00004 668 FunFam GTP-binding protein TypA 472 566 - -
Stsc242196g00004 668 FunFam GTP-binding protein TypA 390 498 - -
Stsc242196g00004 668 Gene3D Translation factors 279 383 - -
Stsc242196g00004 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242196g00004 Stsc-Chr242196 24940 34158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242196g00004 81 205 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 2.13e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242196g00004 K06207 - gmx:100782425 1090.1