Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242193g00002 ATGATGATGAAGCCAATAAGAATAATAGAAAATATGCAAGAAGGAAGGTCATCAGAGACATATAGTGAAGATGATGAAGAAGAAGATAAAAAATCATCATATGATTGCACATTCTGTAGGAGAGGATTCACCAATGCTCAAGCATTAGGAGGCCACATGAATATTCACAGAAAGCACAAAGCCAACAACAATAGGCCCAAAAACACATCAATTATTAATTATCCTCCTTCTTCTTCTTCATCACCACCAAACAAATTCCAAGAATCCATGGCTTCTTCTACTAATAGTTCATCATCAACCACTTGTTATTACCCTTTCTTCGACTCTAATCATCAAAGTCATCCTCCTACTCCTCCTCCTGCTGCATATGAGTTTATGAACACAAGAAGGTATCATCATGATGAATCCCAAGAGCTTCTTGGACCCAATTTGAGTCTCCAAATAGGTAGTCCAAGTACTCATCAACATGCTGATCAGGTTATTAGAACAAGAGGGATTATTAATCATCAGAATAAAGATGCTCAAGTTCTTGACTTAGAGCTCAGGCTATAG 552 0.3732 MMMKPIRIIENMQEGRSSETYSEDDEEEDKKSSYDCTFCRRGFTNAQALGGHMNIHRKHKANNNRPKNTSIINYPPSSSSSPPNKFQESMASSTNSSSSTTCYYPFFDSNHQSHPPTPPPAAYEFMNTRRYHHDESQELLGPNLSLQIGSPSTHQHADQVIRTRGIINHQNKDAQVLDLELRL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242193g00002 183 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Stsc242193g00002 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Stsc242193g00002 183 PANTHER OS07G0101800 PROTEIN 19 183 - -
Stsc242193g00002 183 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Stsc242193g00002 183 Gene3D Classic Zinc Finger 13 95 - -
Stsc242193g00002 183 MobiDBLite consensus disorder prediction 65 94 - -
Stsc242193g00002 183 MobiDBLite consensus disorder prediction 1 30 - -
Stsc242193g00002 183 MobiDBLite consensus disorder prediction 58 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242193g00002 Stsc-Chr242193 23549 24100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242193g00002 34 68 C2H2 Transcription Factor Family AT5G43540 68.571 1.04e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc242193g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242193g00002 - - aip:107615854 104.76