Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242193g00001 ATGTTAAAAGCAGTGGCATTTTGGTTCTTGTTGATTTCCTCACTCCTGTTATGGGTAAGTGTATCTGCAGCAACAACAGATAATGGATTTCCAAGATGTAACTGTGATGATGAATCAAGCTTGTGGACTATTGAGAGCATTCTTGAGTGCCAGAGAGTTGGGGATTTCTTGATTGCTGTGGCATACTTTTCAATCCCCATTGAGCTTCTTTACTTCATAAGTTGCACAAATGTCCCTTTCAAATGGGTCCTTATACAGTTCATTGCCTTCATTGTGCTATGTGGATTGACCCATTTGTTGAATGGCTGGACTTATGGCCCTCACACTTTTCAGCTCATGGTGGCGCTCACCGTCTTCAAGATTCTCACTGCATTGGTGTCCTGCGCCACCGCGATCACGCTTGTCACGCTGATCCCTATGCTTCTTAAGGTCAAGGTCAGGGAGTTCATGCTGAAGAAGAAGACATGGGATCTTGGCCGCGAGGTCGGCCTTATAATGAAGCAAAAGGAGGCTGCAAGCCATGTGAGGATGCTCACTCAGGAGATTCGCAAGTCGCTTGATAGGCATACGATTCTTTATACCACTTTGGTGGAGCTGTCTAAGACACTGGGATTGCAGACTTGTGCTGTGTGGATGCCTAATGTGGAGAAGACAGAGATGAACCTTACTCATGAATTGAATAGGAGGAATTTTGATTTTTCTATACCGATTACTGACCCGGACGTTGTAAAGATTAAAGGAAGTGATGGAGTGAATATACTTAGCCCTGAGTCAGCACTTGCTGGTGCAAGTAGTGTTGTAAATGGTGAGATTGGACCGGTTGCTGCAATCCGTATGCCAATGTTACGAGTTTGTAATTTCAAAGGAGGAACACCTGAGCTAACGCAGGCATGTTATGCAATATTGGTATTGATCCTTCCTAGTTCAGAGACCAGATCTTGGAGCAATCAAGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTTGCGGTGGCCTTATCTCATGCTGCTATTCTGGAAGAATCTCAGCTCATGAGAGAGAAGTTGGAGGAACAAAATCGCGCTTTGCAGCAGGCGAAAAGGGATGCTATGATGGCGNNNNNNNNNNGCCAGGCAAGAAGCTCATTTCAGAAAGTCATGAGTGATGGGATGAGGAGGCCTATGCATTCGATTTTGGGATTGCTTTCAATGGTGCAAGACAATAATTTGAAGAGCGAACAGAAACTTATTGTGGATGCAATGCTGAGGACCAGCAATGTCTTATCGAACTTGATAAACGATGCCATGGACAGTTCGGCAAAGGATGATGGAAGATTCTCATTGGAGATAAGGTCTTTCAGGTTACATTCGTTGATAAAAGAAGCGGCTTGCCTTTCCAAGTGCATGTGTGTCTATAGAGGATTTGGTTTCATGGTCGAGGTCGAGAAGTCTTTGCCGGAGAATGTAATGGGGGATGAGAGGAGGGTTTTTCAGGTAATTTTGCACATGGTTGGGAACCTTCTGGATCATAGCCATGGGGAAGGGACTCTTGTACTTCGGGTTTTCGCCGACACCGGAAGTCAGGGAAGGGCTGACAAGGGATGGACAAGCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGGGATTCTGAAGTTGGGAGCTCGTTTTCTTCAGGATTCGGATTTAGGAAGTTTTCTAGCGATAGGGTTGAGGGCCGATTGAGCTTCAGCATTTGCAAAAGGATAGTTCAGCTGATGCAAGGCAACATATGGTTGGTTCCGAATTCTCACGGTTATCCTCAAAGCATGGCCCTCGTTCTTCGGTTTCAATTACGGCCATCAATCAGCATAGCCATTTCAGAACCCGGCGAGTTTTCGGAGCGAACTGGTTCAAATTCTCTATTGAGAGGTCTGCAAGTTCTGCTGGCCGACAACGACGATGTAAATAGGGCAGTGACCCAAAAGTTGCTTCAGAAATTAGGCTGTGTTGTAGCCACCGTATCATCCGGATTTGAATGCCTTACTGCCATCGGACCTGCCGGAACTTCTTTCCAAATCATTCTTTTGGATCTTCACATGCCTGACATAGATGGCTTCGAAGTCACCACGAGGATTCGGAAGTTCAGGAGCCGAAACTGGCCGATGATCGTAGCGTTGACTGTGAGTATGGAAGATGAATTGTGGGAGAAGTGCATGCAGATTGGTATCAATGGAGTTATCCAAAAACCAGTTTTGTTGCAAGGAATTGCAAGTGAGCTCAGAAGACTCATAATTCAGGGAAATAATGTCCTGTGA 2304 0.4523 MLKAVAFWFLLISSLLLWVSVSAATTDNGFPRCNCDDESSLWTIESILECQRVGDFLIAVAYFSIPIELLYFISCTNVPFKWVLIQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLVTLIPMLLKVKVREFMLKKKTWDLGREVGLIMKQKEAASHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQTCAVWMPNVEKTEMNLTHELNRRNFDFSIPITDPDVVKIKGSDGVNILSPESALAGASSVVNGEIGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPSSETRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEEQNRALQQAKRDAMMAXXXXQARSSFQKVMSDGMRRPMHSILGLLSMVQDNNLKSEQKLIVDAMLRTSNVLSNLINDAMDSSAKDDGRFSLEIRSFRLHSLIKEAACLSKCMCVYRGFGFMVEVEKSLPENVMGDERRVFQVILHMVGNLLDHSHGEGTLVLRVFADTGSQGRADKGWTSWRPSSSSGDVNIRFEIGINSRDSEVGSSFSSGFGFRKFSSDRVEGRLSFSICKRIVQLMQGNIWLVPNSHGYPQSMALVLRFQLRPSISIAISEPGEFSERTGSNSLLRGLQVLLADNDDVNRAVTQKLLQKLGCVVATVSSGFECLTAIGPAGTSFQIILLDLHMPDIDGFEVTTRIRKFRSRNWPMIVALTVSMEDELWEKCMQIGINGVIQKPVLLQGIASELRRLIIQGNNVL 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242193g00001 767 CDD REC_ETR-like 641 756 - -
Stsc242193g00001 767 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Stsc242193g00001 767 FunFam Ethylene receptor 4 336 433 - -
Stsc242193g00001 767 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 599 IPR003594 -
Stsc242193g00001 767 SMART REC_2 641 760 IPR001789 GO:0000160
Stsc242193g00001 767 Pfam GAF domain 187 333 IPR003018 GO:0005515
Stsc242193g00001 767 CDD HisKA 371 432 IPR003661 GO:0000155|GO:0007165
Stsc242193g00001 767 ProSiteProfiles Histidine kinase domain profile. 379 616 IPR005467 -
Stsc242193g00001 767 Gene3D - 438 613 IPR036890 -
Stsc242193g00001 767 Gene3D - 350 437 - -
Stsc242193g00001 767 Gene3D - 173 344 IPR029016 -
Stsc242193g00001 767 SMART HKATPase_4 484 620 IPR003594 -
Stsc242193g00001 767 Gene3D - 627 760 - -
Stsc242193g00001 767 ProSiteProfiles Response regulatory domain profile. 642 760 IPR001789 GO:0000160
Stsc242193g00001 767 CDD HATPase_ETR2_ERS2-EIN4-like 478 610 - -
Stsc242193g00001 767 SUPERFAMILY GAF domain-like 190 336 - -
Stsc242193g00001 767 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Stsc242193g00001 767 PIRSF Ethylen_sen_hybr_HK 1 767 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Stsc242193g00001 767 SMART gaf_1 187 343 IPR003018 GO:0005515
Stsc242193g00001 767 Pfam Response regulator receiver domain 643 750 IPR001789 GO:0000160
Stsc242193g00001 767 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 438 IPR036097 GO:0000155|GO:0007165
Stsc242193g00001 767 SUPERFAMILY CheY-like 639 759 IPR011006 -
Stsc242193g00001 767 Coils Coil 339 366 - -
Stsc242193g00001 767 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 441 598 IPR036890 -
Stsc242193g00001 767 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 30 762 - -
Stsc242193g00001 767 FunFam Ethylene receptor 639 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242193g00001 Stsc-Chr242193 7369 11325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242193g00001 27 758 Miscellaneous Gene Families AT3G04580 57.718 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc242193g00001 GAF 1.1e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242193g00001 K14509 - gmx:100787425 1252.27