Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242192g00004 ATGGAATTTGAAGAGCAAGAAGAGCAAGAGGAGGAAATGGGAATACCTGAGGCAACGCAGCCTCAAGTCACGCAAGCGAGTTACGACTCACTCGGAAACTCAGCAAAACTCGGTGGCGAGGGAACCGTCGGGTCAGGGTTTGGAAGAAAGGGAACAGCGGCGTCGTCGGTGAGGTACCGTGAATGTCAGAAGAATCACGCCGTCAGCTTTGGCGGCCACGCCGTCGACGGTTGCTGCGAGTTCATGGCCTCCGGAGAGGACGGCTCGCTGGAGGCCGTTATCTGCGCCGCCTGTAACTGCCACCGAAACTTCCACCGCAAAGAGATCGACGGCGACATAAGCGGTGGAAGCGGCGCAGGGACTTTACATCACCACCGTCCTCAACCTCCGCCGCATCTTCACCAATTCTCCCCTTACTACCACCACCGCGGTCCGCCGTACCCGGCAGGGTACCTTCACCACCTTGCGACGCCTCCGATGGCTCAGCACCGTCCTCTAGCACTTCCTCCGGCGGGTTCTGGCGGTGGGCTCAGCAGAGACGAGGAGGACATGTCGAACCCTAGCAGCAGCGGCGGCGGTGGAGGCGGCGGCGGCAGAAGCGGTTCTTCGAAGAAAAGGTTCAGAACGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTTGCTTTCGCTGAACAAGTTGGATGGCGGATCCAGAAGCAAGATGAAGCCATGGTTGAACAGTTCTGTGCCGAAGCTTGCGTTAAGAGGAGCGTTCTCAAGGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 804 0.5734 MEFEEQEEQEEEMGIPEATQPQVTQASYDSLGNSAKLGGEGTVGSGFGRKGTAASSVRYRECQKNHAVSFGGHAVDGCCEFMASGEDGSLEAVICAACNCHRNFHRKEIDGDISGGSGAGTLHHHRPQPPPHLHQFSPYYHHRGPPYPAGYLHHLATPPMAQHRPLALPPAGSGGGLSRDEEDMSNPSSSGGGGGGGGRSGSSKKRFRTKFTQEQKDKMLAFAEQVGWRIQKQDEAMVEQFCAEACVKRSVLKVWMHNNKNTLGKKP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242192g00004 267 MobiDBLite consensus disorder prediction 182 196 - -
Stsc242192g00004 267 Gene3D - 189 264 - -
Stsc242192g00004 267 SUPERFAMILY Homeodomain-like 189 265 IPR009057 -
Stsc242192g00004 267 MobiDBLite consensus disorder prediction 162 206 - -
Stsc242192g00004 267 MobiDBLite consensus disorder prediction 18 32 - -
Stsc242192g00004 267 NCBIfam homeobox domain, ZF-HD class 204 261 IPR006455 -
Stsc242192g00004 267 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
Stsc242192g00004 267 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 58 109 IPR006456 -
Stsc242192g00004 267 Pfam ZF-HD protein dimerisation region 57 109 IPR006456 -
Stsc242192g00004 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 263 - -
Stsc242192g00004 267 MobiDBLite consensus disorder prediction 1 50 - -
Stsc242192g00004 267 MobiDBLite consensus disorder prediction 115 136 - -
Stsc242192g00004 267 FunFam Zinc-finger homeodomain protein 2 197 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242192g00004 Stsc-Chr242192 15498 16330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242192g00004 1 263 ZF-HD Transcription Factor Family AT4G24660 49.049 1.90e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc242192g00004 ZF-HD_dimer 3.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242192g00004 - - gmx:100776421 342.043