Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242188g00008 ATGTCCGCCGCCGCCGAAGCTCCTAAACGCCTTGATTCGCCGCCGAAGGAAGCTTCCGGCATCCCGAACCGACCGCCGCCGAAGCGTCACCTAGCCTTCGCGTCGACCAAGCCGCCGTTTGCTCCGCTGGACGACTACCGCAGCTTCTCCGGTCCCCACTGTCGGAAAGCCTCCGATCAAGAACCGGAAGCTGTCGTTGTTCGATCTCCATACATGAAGCGCAAGAGTGAGACACGGGAGCAAAGTAACAGTCTTGGATACACTAATATAATTAGNNNNNNNNNNGGGAGAACATATAATAAGTCAAGGGCTTCCAAGGAAGGTAGATCTGGTCCACAAACACCCATCTTAGAGGCTGGATCCCCATCTCTTACTCCTAGCAGCTGCCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAATTCGTCAATTTGCTCAAGCATGCAGAGGGTGGCAATCTTGACTTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGAAGGATATATGACATAACTAATGTTCTGGAAGGAATTGGTCTTATAGAGAAGAAGATCAAGAACAGAATACATTGGAAGGGGATTGATTGTTCTACATCTGATGGGATAGATGGTGATGTATCTATGCTGAAGGAAGAAGTTGAGAAACTTTCCTCGGAGGAGCACAGATTGGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGATTTTAAGTGAAGATGAAAACAATAAGAAGATGCTTTACGTAACTGAAGATGATATCAAGGCCTTACCTGAATTCCAGAATGAAACTCTTATAGCAATTAAAGCTCCCCATGGAACCACACTGGAAGTCCCGGAACCTGAGGAAGCTGTTGACTACCCACAGAGGAGATATAGGGTCATTCTTAGAAGCACAATGGGCCCCATTGATGTCTTCCTTATCAGTCAATTTGAGGAGAAATTCGAAGAGATGAGCTTTCCACTTGCTTCAAGTTCTGGGTCCAACGAACATCAAGCAGCAGAACAGTTTCCTGTTGAATGCAATGATAAAGGCCCTGAACCTCAAGCTCAACCTTCTTCTAATACCTGTTCTGATCTAAACACTGTACAAGAATTTGCTGGTGGCATGATGAAAATTGTTCCTTCAGCCGCTGATACTGATGCAGATTACTGGCTTCTATCAGATGTTGAAGCTAGCATAACAGACATGTGGAAAACAGATTCTAATGTAGATTGGGATGGTGTGGACATGCTTCATGCTGACTTTGGAATCATCTCGAGACCACAAACTCCATCATCTGGGTTTGCTGAAGCACCATCAGCAGTAGCCAGCATTCCTCACAGGTGA 1335 0.4524 MSAAAEAPKRLDSPPKEASGIPNRPPPKRHLAFASTKPPFAPLDDYRSFSGPHCRKASDQEPEAVVVRSPYMKRKSETREQSNSLGYTNIIXXXXGRTYNKSRASKEGRSGPQTPILEAGSPSLTPSSCRYDSSLGLLTKKFVNLLKHAEGGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKIKNRIHWKGIDCSTSDGIDGDVSMLKEEVEKLSSEEHRLDDQIREMQERLRILSEDENNKKMLYVTEDDIKALPEFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRVILRSTMGPIDVFLISQFEEKFEEMSFPLASSSGSNEHQAAEQFPVECNDKGPEPQAQPSSNTCSDLNTVQEFAGGMMKIVPSAADTDADYWLLSDVEASITDMWKTDSNVDWDGVDMLHADFGIISRPQTPSSGFAEAPSAVASIPHR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242188g00008 444 Gene3D - 125 197 IPR036388 -
Stsc242188g00008 444 MobiDBLite consensus disorder prediction 49 80 - -
Stsc242188g00008 444 FunFam E2F transcription factor 1 125 197 - -
Stsc242188g00008 444 SUPERFAMILY "Winged helix" DNA-binding domain 130 193 IPR036390 -
Stsc242188g00008 444 Gene3D - 203 312 - -
Stsc242188g00008 444 Pfam E2F transcription factor CC-MB domain 211 311 IPR032198 GO:0046983
Stsc242188g00008 444 SUPERFAMILY E2F-DP heterodimerization region 208 312 IPR037241 -
Stsc242188g00008 444 MobiDBLite consensus disorder prediction 324 362 - -
Stsc242188g00008 444 SMART E2F_TDP_2 130 195 IPR003316 GO:0005667|GO:0006355
Stsc242188g00008 444 CDD E2F_DD 211 312 IPR032198 GO:0046983
Stsc242188g00008 444 PANTHER TRANSCRIPTION FACTOR E2F 74 406 IPR015633 GO:0000978|GO:0006357
Stsc242188g00008 444 MobiDBLite consensus disorder prediction 1 124 - -
Stsc242188g00008 444 Coils Coil 208 242 - -
Stsc242188g00008 444 Pfam E2F/DP family winged-helix DNA-binding domain 132 195 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242188g00008 Stsc-Chr242188 25836 30849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242188g00008 22 442 E2F-DP Transcription Factor Family AT2G36010 55.269 4.99e-149 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc242188g00008 E2F_CC-MB 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242188g00008 K06620 - gmx:100811762 598.201