Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242184g00002 ATGTCTCTTGAAGAGTCTCTAAGATCTCTCTCGCTTGACTACCTCAACCTGCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTGGAAGGCCGACTCGTCCACGCCCACCGCTGCATCCTCGCAGCACGGAGCCTATTCTTCAGGAAATTTTTTTGCGGCCCGGACCCTCCCTGCGGCCTCGACCCCCTCGGAGCCTCAAGGGGAAGCCCAGGCCCGACGACCACGGGCTCATCCAGGACCCCGGCAGGGGTGATCCCCGTGAACTCCGTGGGANNNNNNNNNNTCCTGTACAGCGGCCAGGTGTCCATCGTGCCTCAGAAGCACGAGGCCCGGCCCAATTGCGGTGAGAGGGGTTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTAGCCCTTGACACCCTCGCTGCCGCTAGATATTTTGGCGTTGAACAGCTCGCATTGCTCACTCAGAAACAACTAGCAAGCATGGTAGAGAAAGCATCAATTGAAGATGTGATGAAGGTACTATTGGCTTCAAGAAGGCAAGAAATGCAGCAGTTATGGACAACTTGCTCCCACTTAGTGGCCAAGTCAGGCCTCCCACCTGAGGTTCTTGCCAAGCACCTCCCAATCGACCTCGTTGCCAAGATCGAAGAGCTCCGCCTCAAATCCTCCCTCTCTCGCCGCTCCCTCATGCCATCTCCCCACCACCACCACCATCACCACCACGACCTCGCCCTCGCCGCCGTCGGAGACATCGAAGACCAGAAGATCCGCAGGATGCGACGGGCCCTCGATTCCTCCGACGTCGAGCTTGTTAAGCTCATGGTGATGGGCGAGGGCCTCAACCTGGACGAGGCCCTCGCCCTTCACTATGCAGTGGAGAATTGCTCCAGGGAGGTCGTCAAGGCCCTCCTGGAGCTCGGCGCGGCGGACGTCAACTTCCCGGCCGGTCCAGCCGGGAAGACGCCGCTCCATGTTGCCGCGGAAATGGTGTCCCCGGACATGGTGGCCGTTTTACTCGACCACCACGCGGATCCTAACGTGCGCACCGTGGATGGCGTGACCCCTTTGGATATCCTGAGAACCCTAACCTCCGATTTCCTCTTCAAAGGTGCGGTTCCTGGTCTCACTCACATTGAACCCAACAAGCTAAGGCTGTGTTTGGAGCTAGTTCAATCTGCAGCACTTGTTCTTTCAAGGGAAGAAGGGAATGCAAACCCTCCTTGTTCAGCAACAGCAATATACCCTCCTCCAATGAGCACCGATCATCAGGACCATAGTGGGAACTTGGATTCAAGATTGGTGTACCTTAATCTTGGAGCTTCAGGTTCCGGCGGACAAATGGGTAGTGGTGGTGGTGGTGGAGACGATGATAGTAGCAGCCACAGTAGCCATAGCCAGAGAGAAGGGATGAACCGTCATGGGTCGCAAGGTGGTGGATGTGACCCTTCAATGTACCACCACCACCATCATCACTCTCATCATGACTACTAA 1488 0.5645 MSLEESLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPCGLDPLGASRGSPGPTTTGSSRTPAGVIPVNSVGXXXXLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRRQEMQQLWTTCSHLVAKSGLPPEVLAKHLPIDLVAKIEELRLKSSLSRRSLMPSPHHHHHHHHDLALAAVGDIEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANPPCSATAIYPPPMSTDHQDHSGNLDSRLVYLNLGASGSGGQMGSGGGGGDDDSSSHSSHSQREGMNRHGSQGGGCDPSMYHHHHHHSHHDY 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242184g00002 495 Pfam Domain of unknown function (DUF3420) 196 259 IPR024228 -
Stsc242184g00002 495 Pfam BTB/POZ domain 16 57 IPR000210 GO:0005515
Stsc242184g00002 495 Gene3D Potassium Channel Kv1.1; Chain A 13 196 IPR011333 -
Stsc242184g00002 495 FunFam regulatory protein NPR5 isoform X2 248 365 - -
Stsc242184g00002 495 MobiDBLite consensus disorder prediction 400 495 - -
Stsc242184g00002 495 Gene3D - 249 365 IPR036770 -
Stsc242184g00002 495 SMART ANK_2a 282 312 IPR002110 GO:0005515
Stsc242184g00002 495 SMART ANK_2a 317 346 IPR002110 GO:0005515
Stsc242184g00002 495 ProSiteProfiles BTB domain profile. 25 54 IPR000210 GO:0005515
Stsc242184g00002 495 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 488 IPR044284 GO:0099402
Stsc242184g00002 495 SUPERFAMILY POZ domain 9 57 IPR011333 -
Stsc242184g00002 495 SUPERFAMILY Ankyrin repeat 276 360 IPR036770 -
Stsc242184g00002 495 SMART BTB_4 25 161 IPR000210 GO:0005515
Stsc242184g00002 495 MobiDBLite consensus disorder prediction 65 85 - -
Stsc242184g00002 495 MobiDBLite consensus disorder prediction 71 85 - -
Stsc242184g00002 495 FunFam BTB/POZ domain and ankyrin repeat-containing protein NH5.2 3 194 - -
Stsc242184g00002 495 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Stsc242184g00002 495 ProSiteProfiles Ankyrin repeat region circular profile. 317 347 - -
Stsc242184g00002 495 Pfam Ankyrin repeats (3 copies) 265 347 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242184g00002 Stsc-Chr242184 11002 15988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242184g00002 242 371 C2H2 Transcription Factor Family AT5G12850 30.872 4.03e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc242184g00002 Ank_2 7.4e-12 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242184g00002 K14508 - zju:107433767 677.552