Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242181g00001 ATGGGAGAAATAACACAAGGAGAGCCAGCAATTTTAGAAGCATGGAGCAACAAAGAACAAGAAGAAGAAGAAGCAGAAGCCCAAATAGAAATATGGAAATACATTTTTGGGTACGTGGAATTGGCAGTTATAAAATGTGCCATTGAACTTGGCATAGCTGATGCCATTGAAAGCCATGGTAGTCCCATGACACTTTCCCAACTTTCATCAGCATTAGCCTCTGATCCTTCCCTTCTTAACCGAATCTTGAGATTCTTGAGTAACAGAAAGATATTCAAAGCCGTTAGAAAAGACTCAGATTCAGATTCCAACACCACTTATTATGCCAATACGGCGTTGTCCCGCCGTCTGGCGAAACGCGGGCAGCAAAGCATGGCCTCGTTTCTCCTCCTGGAGAGCAGTCCGGTCATGCTTGCGCCCTGGCACAGCCTGAGCACCCGCATTTCCGCCAACAACAGCGGGACAACGAACTTCCCTTTCGAGAAGGCACACGGCGAAGACGTGTGGCGCTTCGCCGCCGAGAATCCTGGCCACAGCAACCTTATAAACGAGGCAATGGCGTGCAGTGCTAATATTGTGGTGCCAGCCATCGTTGAAGGTTGCGTTGGCGAGGTGTTTGGCGGCGTGAAAACGGTGGTGGATGTTGGTGGTGGAAACGGCACGGCGATGCGCCTTTTGGTTAAGGCTTGCCCTTGGATTGGAGGAATCAATTTTGATCTTGCTCATGTCATTGCTGTGGCTCCGGAGTCCGAAGGAGTTCAAAATGTTGCTGGTGACATGTTTCTTGGTGTTCCCAAAGCTGATGCTGCTTTTATTATGTGGGTTTTGCATGACTGGGGTGACGAGGAATGCATCCAAATATTGAAGAACTGTAGGGAAGCAATTCCAAAGGAAAATGGAAAAGTTATAATTGTGGAGGCAGTTATTGAAGAAGGAACAACAAATAATGAAAAAGGTGGAAATAATAAATTAAAGGATGTAGGGTTGATGTTGGATATGGTAATGATGGCACACACAAGCTTGGGCAAAGAGAGAACACTGAAAGAGTGGGAATATGTTATCAAAATGGCTGGTTTCACTTCTTACACTGTCAAAGACATAGATGCTGTTCAATCTCTCATCTTGGCCTTCCCATGA 1137 0.4617 MGEITQGEPAILEAWSNKEQEEEEAEAQIEIWKYIFGYVELAVIKCAIELGIADAIESHGSPMTLSQLSSALASDPSLLNRILRFLSNRKIFKAVRKDSDSDSNTTYYANTALSRRLAKRGQQSMASFLLLESSPVMLAPWHSLSTRISANNSGTTNFPFEKAHGEDVWRFAAENPGHSNLINEAMACSANIVVPAIVEGCVGEVFGGVKTVVDVGGGNGTAMRLLVKACPWIGGINFDLAHVIAVAPESEGVQNVAGDMFLGVPKADAAFIMWVLHDWGDEECIQILKNCREAIPKENGKVIIVEAVIEEGTTNNEKGGNNKLKDVGLMLDMVMMAHTSLGKERTLKEWEYVIKMAGFTSYTVKDIDAVQSLILAFP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242181g00001 378 Gene3D - 13 117 IPR036388 -
Stsc242181g00001 378 FunFam O-methyltransferase family protein 15 117 - -
Stsc242181g00001 378 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 378 IPR016461 GO:0008168
Stsc242181g00001 378 Pfam Dimerisation domain 43 87 IPR012967 GO:0046983
Stsc242181g00001 378 CDD AdoMet_MTases 211 305 - -
Stsc242181g00001 378 Gene3D Vaccinia Virus protein VP39 119 376 IPR029063 -
Stsc242181g00001 378 FunFam O-methyltransferase family protein 119 377 - -
Stsc242181g00001 378 Pfam O-methyltransferase domain 153 359 IPR001077 GO:0008171
Stsc242181g00001 378 SUPERFAMILY "Winged helix" DNA-binding domain 20 120 IPR036390 -
Stsc242181g00001 378 PIRSF O-mtase 11 378 IPR016461 GO:0008168
Stsc242181g00001 378 PANTHER O-METHYLTRANSFERASE 40 361 IPR016461 GO:0008168
Stsc242181g00001 378 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 375 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242181g00001 Stsc-Chr242181 11732 15021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242181g00001 44 364 Monolignol Biosynthesis Gene Families AT5G54160 34.356 6.23e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242181g00001 K22588 - gmx:100782951 451.055