Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242176g00008 ATGGTAGACGTGGATCCATCCAAGAAAGTAGCTGATAGGTATCTCAAGCGCGAGGTTCTTGGTGAAGGTACCTATGGAGTTGTCTACAAAGCCATCGATACACAGACGGGGCAGACGGTTGCGATTAAGAAGATTAGGCTTGGTAAGCAGAAAGAAGGAGTGAATTTTACAGCTCTTAGAGAAATAAAACTGCTCAAAGAGCTCAAAGATCCAAATATTATTGAGTTGATTGATGCATTCCCGCACAAAGGGAACTTGCATCTTGTGTTTGAGTTCATGGAGACTGACCTTGAAGCTGTTATAAGGGACAGAAATATTTTTCTTTCGCCGGGGGATATAAAATCTTACCTTCAGATGACACTGAAAGGTCTTGCGGTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGGTCTAATGGACAGCTAAAACTTGCAGATTTTGGTTTAGCACGGATATTTGGAAGCCCAGATCGCAGGTTCACCCATCAGGTATTTGCTCGGTGGTACAGAGCACCCGAACTATTATTTGGTACCAAGCAGTATGGAGCAGGGGTAGATGTTTGGGCTGC 593 0.4351 MVDVDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGAGVDVWAA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242176g00008 198 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Stsc242176g00008 198 PANTHER CELL DIVISION PROTEIN KINASE 12 198 - -
Stsc242176g00008 198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Stsc242176g00008 198 ProSiteProfiles Protein kinase domain profile. 14 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242176g00008 198 SMART serkin_6 14 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242176g00008 198 FunFam Cyclin-dependent kinase D-1 5 94 - -
Stsc242176g00008 198 SUPERFAMILY Protein kinase-like (PK-like) 9 197 IPR011009 -
Stsc242176g00008 198 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Stsc242176g00008 198 Gene3D Transferase(Phosphotransferase) domain 1 95 198 - -
Stsc242176g00008 198 Pfam Protein kinase domain 16 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242176g00008 Stsc-Chr242176 36017 38259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242176g00008 12 198 Core Cell Cycle Gene Families AT1G66750 86.096 8.59e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Stsc242176g00008 Pkinase 1.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242176g00008 K02202 - gmx:100814263 387.882