Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242175g00007 ATGATTGATGATCAGAAGTTTGAGAACGAATCGTCTTACTATAGTGATTATTCATACGCAGAGAGTATGTCAGGGGTAGATGAGTCTTTTTCTGATTGTCCGCCAACAAACAATGGAAGATTATTAGAATGCAAGAAGAAATTGAAGAAAGTGAGGTCCACCAGTAGCTATCATAGGTCGTTAAACATGGAATCATCCCCCAGCAGAAGAAGTTCACCGACATTCTTAAGGCAGAAATTATCAAGTTTGAAACAAAAGAGAAGCTCACCTAGCGTAAAAGAATTGAGGAGAAAATTTGAACCTAATTCAAAGTTGCATAACGCCACGTGTTCTTCAACCCTCAAGCTCGCTCATTTCACCGATGGTAACGACCTTCCACACGATCATCATCATCATCATGGGTCTAAGTCTAATAAAGAGTTATCAGTTATGAAGGTGTGTTCATATGCTTACTGCAATGCTCATGTCTGGTACCATGAAGAGTTGCCGCCGCCGCCGTGCGCATCGCGCCGCCGGCAATTGAAGAATCAGAGCCACACCAGAATCAAATCGGACAGTCAACGGCCTGTTACCAGGAAATCTTCTCACAGGAGCAGAGTTTCCAACAATGAGGATTCGGTGAATGAAATGACAACCGATTATTGCGAAACCGAAACCGATTTGGACATTGATGATGGTAAACATAAAAAGAAGTACTCAGTGCCAAAAGCATTTGACAAGATTCTTGTGCAGCAAGAAACTGAAGCAGAGGTCTCAGATGATGATAATAATAACAAGTTAAAAAAATCTGAAGGGATTTCCGCCTCGAATGAAGGCGTCGAAGATGATGATAATAATAATAATAATAAGAGTGGTGGAGAAGTCGGGAAAGATGAAACTTGCGTCGCAAGCAAGCCGGATAAAAAATTACGAAAAGGATGGAACGATCTGAAAAAGTTGATCCTCTTTAAGAGGTTTGTGAAGGCATTGGAAGAGGCAAGAGAAGTCAACCGGCGGCGAAGACTTAGAGAGAGACCTCTGTCGCGTGCTGGTAGCCTAGGAACGGAAAAAGCTGATACCGAAAGAAACATAACAGAAGAAGAAAAGAATGCTGAGGAGTGGATGATTGATTATGCACTTCAGAAGGTAATTGCTGAACCTCCTCGTACGCCTACTAAACGAAAGCCCAGAGTGGCACTTCTTGTAGAAGCTTTCGAAACGGTTGTGCCGTTAGGACAGTTAGACTCTAACCGCAGGCCTTCGCTTTCAAATCGACCAAGATCAACTAAATAG 1272 0.4253 MIDDQKFENESSYYSDYSYAESMSGVDESFSDCPPTNNGRLLECKKKLKKVRSTSSYHRSLNMESSPSRRSSPTFLRQKLSSLKQKRSSPSVKELRRKFEPNSKLHNATCSSTLKLAHFTDGNDLPHDHHHHHGSKSNKELSVMKVCSYAYCNAHVWYHEELPPPPCASRRRQLKNQSHTRIKSDSQRPVTRKSSHRSRVSNNEDSVNEMTTDYCETETDLDIDDGKHKKKYSVPKAFDKILVQQETEAEVSDDDNNNKLKKSEGISASNEGVEDDDNNNNNKSGGEVGKDETCVASKPDKKLRKGWNDLKKLILFKRFVKALEEAREVNRRRRLRERPLSRAGSLGTEKADTERNITEEEKNAEEWMIDYALQKVIAEPPRTPTKRKPRVALLVEAFETVVPLGQLDSNRRPSLSNRPRSTK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242175g00007 423 MobiDBLite consensus disorder prediction 178 203 - -
Stsc242175g00007 423 Pfam Plant calmodulin-binding domain 303 403 IPR012417 GO:0005516
Stsc242175g00007 423 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 47 209 IPR044681 GO:0005516
Stsc242175g00007 423 MobiDBLite consensus disorder prediction 52 100 - -
Stsc242175g00007 423 SMART CaM_binding_2 280 403 IPR012417 GO:0005516
Stsc242175g00007 423 Coils Coil 350 370 - -
Stsc242175g00007 423 MobiDBLite consensus disorder prediction 163 211 - -
Stsc242175g00007 423 MobiDBLite consensus disorder prediction 247 299 - -
Stsc242175g00007 423 MobiDBLite consensus disorder prediction 55 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242175g00007 Stsc-Chr242175 28503 31203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242175g00007 250 405 Calmodulin-binding Proteins AT5G04020 36.145 6.98e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242175g00007 - - aip:110268874 421.779