Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242174g00003 ATGAATCAGCAATGTCTCCTTAAGGCTGCTGCTGCCAATCCTGTAGTTGGGTCCCAAGTTTGGTTGGAGGATCCAAAGGAAGCTTGGATAGATGGTGAAGTTTTGGAGGTTAAGGGGCAAGACATCAAAGTCCTCTGCACTTCAGGGAAGACGGTTGTGGTTAAAGCGTCCAGTGTTTATCATAAAGATACCGAAGCTCCACCATGTGGAGTGGATGATATGACAAAGCTTGCTTATCTGCATGAACCTGGTGTCCTAGCTAATCTGAGATCTAGATATGACATCAATGAAATATATACGTACACTGGGAACATATTGATTGCTGTGAATCCTTTCATAAAGCTCCCCCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGCTTTTGGAATCAGTCAGTCAATACTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGCACGAAGTTACTCATGCGCTATCTTGCTTACATGGGAGGTAGAGCTGCTGTTGGTGAAGGTAGGACTGTAGAGCAGAAAGTCCTAGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGGAAGTTTGTGGAGATCCAATTTGACAAGAGGGGAAGAATTTCTGGAGCTGCTATTAGAACTTATCTGTTAGAAAGATCACGTGTCTGCCAGTTGTCAGATCCAGAAAGAAATTATCACTGTTTCTATATGCTGTGTGCTGCACCTCCAGAGGATGTTAAGAAGTACAAATTAGGAAACCCAAGAACATTTCATTATCTAAACCAGACAAATTGCTTTGAGTTGGAAGGACTTGATGAAGCCAAAGAATATCGTGATACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCTATATTCCGAGTGGTAGCTGCAATTTTGCATCTTGGAAATATTGAATTTACAAAAGGACAAGAAATTGATTCATCTATGCCCAAAGATGAAAAATCTCGGTTCCATCTACAAACTGCTGCTGAACTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAGCGAGTGATTGTTACCCGTGATGAAACAATTACTAAATGGTTAGATCCAGAATCTGCTGCACTTAGCCGAGATGCTTTGGCTAAGATTGTGTACACAAGGTTGTTTGACTGGTAA 1197 0.4135 MNQQCLLKAAAANPVVGSQVWLEDPKEAWIDGEVLEVKGQDIKVLCTSGKTVVVKASSVYHKDTEAPPCGVDDMTKLAYLHEPGVLANLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAVGEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKRGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPPEDVKKYKLGNPRTFHYLNQTNCFELEGLDEAKEYRDTRRAMDVVGISSEEQDAIFRVVAAILHLGNIEFTKGQEIDSSMPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPESAALSRDALAKIVYTRLFDW 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242174g00003 398 PANTHER MYOSIN 64 398 - -
Stsc242174g00003 398 Gene3D Myosin VI head, motor domain, U50 subdomain 297 398 - -
Stsc242174g00003 398 SMART MYSc_2a 64 398 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc242174g00003 398 Gene3D Kinesin motor domain 19 132 IPR036961 -
Stsc242174g00003 398 Pfam Myosin N-terminal SH3-like domain 17 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc242174g00003 398 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 15 64 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc242174g00003 398 PRINTS Myosin heavy chain signature 99 118 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc242174g00003 398 PRINTS Myosin heavy chain signature 183 210 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc242174g00003 398 FunFam Myosin 2 299 398 - -
Stsc242174g00003 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 398 IPR027417 -
Stsc242174g00003 398 Gene3D Kinesin motor domain 133 280 IPR036961 -
Stsc242174g00003 398 ProSiteProfiles Myosin motor domain profile. 69 398 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc242174g00003 398 Pfam Myosin head (motor domain) 71 130 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc242174g00003 398 Pfam Myosin head (motor domain) 135 398 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242174g00003 Stsc-Chr242174 16953 20743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242174g00003 16 398 Myosins gene family AT4G28710 78.218 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242174g00003 K10357 - gmx:100819463 726.857