Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242173g00006 ATGGAGACGCAGCGGATAATGGAGTTTCCGCATAGGAGCGTAGACAAGAGGCCAAGGAAGAGGCCTCGTTTAACATGGGACATGCCTCCTCCTCCGCCTCCTATTCCTCCTCCTCTTCCTTCCAAGGTTCTTCCAGCTTCAAATCGCAGCCAGGGGGTTGGGAATGGCATTGTTTCAAATCATGTTTATTCATCATCCATGTTTTATAGGGGAATGTCTCGCAATGGATCACCCCCTTGGAGGCCTGATGATAAAGATGGTCACTATGTTTTCGCAGTGGGTGAAAATTTAACACCTCGATACAGGATTCTTGGTAAGATGGGTGAAGGAACATTCGGTCAAGTCTTGGAATGTTTTGACAATGAAAAGAAAGAAGTTGTGGCAATTAAAATTGTTCGCTCCCTAATCAAGTATCGTGAGGCTGCAATGACTGAAATTGATGTGTTGATGAGGCTAGCCAAACATGATGTTTCTGGTGCTCGTTTTGCTGCACGTATTCTCAACAACTCACAAATATCAAAATTTAACATCCATTCTCTTTTGTCGGCACATTCTTCATTTGTGACATTAAAGTTTTTATCACGGACCACAAAAGATGGCTCCTATTTCAAGAATCTTCCCAAGACAAGTTCCATTAAACTCATTGATTTTGGGAGTACGACATTTGAGCATCAAGATCATAGTTATGTGGTGTCAACAAGACATTATCGTGCGCCAGAAGTTATCTTAGGTCTTGGATGGAACTATCCTTGTGACCTTTGGAGTGTAGGCTGCATACTAGTTGAACTTTGCACAGGTGAGGCACTTTTCCAAACGCACGAGAACTTGGAACATCTTGCCATGATGGAGCGAGTTTTAGGGCCACTACCTCCCCAAATGGTGGTCAGGGCTGATCGTCGAGCTGAGAAGTATTTTAGAAGGGGTGCACGTTTGGGTTGGCCTGATAATTCAACCTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCTCGATTACCGAATCTTATAATGCAGCACGTGGATCATTCTGCTGGTGACTTGATTGACCTCTTGCAAGGGCTTTTACGGTATGACCCAGTAGAGCGGCTTAGAGCAAGGGAAGCTTTAAGGCATCCCTTCTTTTTTACAGGAGATCCTAAAAGAAATGGTTACTCATTATAA 1161 0.4384 METQRIMEFPHRSVDKRPRKRPRLTWDMPPPPPPIPPPLPSKVLPASNRSQGVGNGIVSNHVYSSSMFYRGMSRNGSPPWRPDDKDGHYVFAVGENLTPRYRILGKMGEGTFGQVLECFDNEKKEVVAIKIVRSLIKYREAAMTEIDVLMRLAKHDVSGARFAARILNNSQISKFNIHSLLSAHSSFVTLKFLSRTTKDGSYFKNLPKTSSIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPPQMVVRADRRAEKYFRRGARLGWPDNSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPVERLRAREALRHPFFFTGDPKRNGYSL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242173g00006 386 Pfam Protein kinase domain 209 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242173g00006 386 ProSiteProfiles Protein kinase domain profile. 101 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242173g00006 386 SMART serkin_6 101 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242173g00006 386 MobiDBLite consensus disorder prediction 25 43 - -
Stsc242173g00006 386 MobiDBLite consensus disorder prediction 1 51 - -
Stsc242173g00006 386 MobiDBLite consensus disorder prediction 1 24 - -
Stsc242173g00006 386 SUPERFAMILY Protein kinase-like (PK-like) 93 376 IPR011009 -
Stsc242173g00006 386 Gene3D Transferase(Phosphotransferase) domain 1 207 374 - -
Stsc242173g00006 386 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 187 376 - -
Stsc242173g00006 386 Gene3D Phosphorylase Kinase; domain 1 77 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242173g00006 Stsc-Chr242173 25442 29760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242173g00006 86 382 MAP Kinase Gene Family AT1G10210 25.740 3.35e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Stsc242173g00006 Pkinase 4.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242173g00006 K08287 - cave:132191480 552.747