Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242173g00004 ATGGAGACGCAGCGGATAATGGAGTTTCCGCATAGGAGCGTAGACAAGAGGCCAAGGAAGAGGCCTCGTTTAACATGGGACATGCCTCCTCCTCCGCCTCCTATTCCTCCTCCTCTTCCTTCCAAGGTTCTTCCAGCTTCAAATCGCAGCCAGGGGGTTGGGAATGGCATTGTTTCAAATCATGTTTATTCATCATCCATGTTTTATAGGGGAATGTCTCGCAATGGATCACCCCCTTGGAGGCCTGATGATAAAGATGGTCACTATGTTTTCGCAGTGGGTGAAAATTTAACACCTCGATACAGGATTCTTGGTAAGATGGGTGAAGGAACATTCGGTCAAGTCTTGGAATGTTTTGACAATGAAAAGAAAGAAGTTGTGGCAATTAAAATTGTTCGCTCCCTAATCAAGTATCGTGAGGCTGCAATGACTGAAATTGATGTGTTGATGAGGCTAGCCAAACATGATGTTTCTGGTGCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTACGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATGTGTGTGA 654 0.4373 METQRIMEFPHRSVDKRPRKRPRLTWDMPPPPPPIPPPLPSKVLPASNRSQGVGNGIVSNHVYSSSMFYRGMSRNGSPPWRPDDKDGHYVFAVGENLTPRYRILGKMGEGTFGQVLECFDNEKKEVVAIKIVRSLIKYREAAMTEIDVLMRLAKHDVSGARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVACV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242173g00004 217 ProSiteProfiles Protein kinase domain profile. 101 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242173g00004 217 SUPERFAMILY Protein kinase-like (PK-like) 88 215 IPR011009 -
Stsc242173g00004 217 Gene3D Phosphorylase Kinase; domain 1 88 181 - -
Stsc242173g00004 217 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 215 - -
Stsc242173g00004 217 MobiDBLite consensus disorder prediction 25 43 - -
Stsc242173g00004 217 Pfam Protein kinase domain 101 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242173g00004 217 Gene3D Transferase(Phosphotransferase) domain 1 155 216 - -
Stsc242173g00004 217 MobiDBLite consensus disorder prediction 1 51 - -
Stsc242173g00004 217 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242173g00004 Stsc-Chr242173 25258 27318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242173g00004 87 211 EF-hand Containing Proteins AT5G22840 32.824 2.68e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Stsc242173g00004 Pkinase 2.3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242173g00004 K08287 - tcc:18597826 355.14