Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242173g00002 ATGAAGAGACAGAGGGAAAGTGAAGGTTATTATTCTTCAGTAGTAGAGAGCATTGATTTGGCGAAATGCCTAATGCTACTTCCTCTTCTCCAAGAAAGCAGCAACAAGGCATCATCAATGCATCATAGAAATAGCAATAACAATGGCTCTTCTGTGGAGTTTGAGTGCAAGACTTGCAACCGGAAATTCTCTTCGTTTCAGGCACTGGGAGGGCACAGAGCTAGCCACAAGAGGCAGAAGCTAGAAGATGGTGAAGAAGAGCTTAAGCAGCAAGCCAAGTCACTGAGTCTCTGGAACAACCCGAAGATGCACGAGTGCTCCATTTGTGGCCTCAAATTCTCTTTAGGCCAAGCACTCGGTGGTCACATGAGAAAACACAGAGGATTATTATCTCATGAATCATCATCATCATCAATAATGAACCATGTTATTGAGAAAACCCCGGTTCTTATGAGATCTAATAGCAAGAGGATTACGTGTCTAAACTTGGATTTGAACTTATCACCGTTCGAGCCCAATGATGATTCCTTTGCCAACAAGAAAACCATCCCGCCGGTTCCTCTTTCTTTCTTCTGA 576 0.434 MKRQRESEGYYSSVVESIDLAKCLMLLPLLQESSNKASSMHHRNSNNNGSSVEFECKTCNRKFSSFQALGGHRASHKRQKLEDGEEELKQQAKSLSLWNNPKMHECSICGLKFSLGQALGGHMRKHRGLLSHESSSSSIMNHVIEKTPVLMRSNSKRITCLNLDLNLSPFEPNDDSFANKKTIPPVPLSFF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242173g00002 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Stsc242173g00002 191 Pfam C2H2-type zinc finger 54 79 - -
Stsc242173g00002 191 Pfam C2H2-type zinc finger 104 127 - -
Stsc242173g00002 191 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Stsc242173g00002 191 SUPERFAMILY beta-beta-alpha zinc fingers 54 126 IPR036236 -
Stsc242173g00002 191 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Stsc242173g00002 191 SMART c2h2final6 104 126 IPR013087 -
Stsc242173g00002 191 SMART c2h2final6 54 76 IPR013087 -
Stsc242173g00002 191 Gene3D Classic Zinc Finger 51 126 - -
Stsc242173g00002 191 PANTHER ZINC FINGER PROTEIN ZAT5 2 175 - -
Stsc242173g00002 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242173g00002 Stsc-Chr242173 19912 20487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242173g00002 1 190 C2H2 Transcription Factor Family AT2G37430 42.932 7.62e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc242173g00002 zf-C2H2_6 1e-10 CL0361