Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242173g00001 ATGAAGAGAGAAATAGATCAAATAGAGAACACCAACATAGATTTGGCGAATTGCCTTATGCTTTTGTCTTCTAATCCAATTATCAGCAAGAATAATGGAAGAAGCATGAACAATAATAGCAATGGTGAATTCGAGTGCAAGACATGTAAGCGCAAGTTCCCATCGTTTCAAGCCCTTGGAGGGCATAGAACAAGCCACAACAAGAAGCCAAAGCTGGAAGGTGAAGAACAACTCAAAGCAGAAGCCAAGACATCACTTACTTTGGGTAACAACAACAATAATAATAAGGCGAAGATGCACGAATGCTCCATTTGTGGCCAAGAATTCTCCCTTGGTCAGGCACTTGGAGGTCACATGAGAAGGCACAGATCATCACAAAATCATGGATTCATTATTGATGATCATCAACAACAGAAACAACAACAACAACAACAAGTAGTGTCTTCTATGAATAATAATAATGATGATATTAAACTTGTTGTTGCTAAAGTTCCGGTATTCAAGAGATCTAATAGTCTCAGGGCTAGGTGCTTGGACTTGAACCTAACACCATTGGAGAATGATTTGAAGGTGCTCTTTGGAAATATTGCTCCTAATAATAAGCTTCATGCCTTAGTTTGA 621 0.3865 MKREIDQIENTNIDLANCLMLLSSNPIISKNNGRSMNNNSNGEFECKTCKRKFPSFQALGGHRTSHNKKPKLEGEEQLKAEAKTSLTLGNNNNNNKAKMHECSICGQEFSLGQALGGHMRRHRSSQNHGFIIDDHQQQKQQQQQQVVSSMNNNNDDIKLVVAKVPVFKRSNSLRARCLDLNLTPLENDLKVLFGNIAPNNKLHALV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242173g00001 206 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Stsc242173g00001 206 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Stsc242173g00001 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Stsc242173g00001 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Stsc242173g00001 206 SMART c2h2final6 44 66 IPR013087 -
Stsc242173g00001 206 SMART c2h2final6 100 122 IPR013087 -
Stsc242173g00001 206 Gene3D Classic Zinc Finger 41 122 - -
Stsc242173g00001 206 PANTHER ZINC FINGER PROTEIN ZAT5 12 188 - -
Stsc242173g00001 206 Coils Coil 132 152 - -
Stsc242173g00001 206 SUPERFAMILY beta-beta-alpha zinc fingers 44 122 IPR036236 -
Stsc242173g00001 206 Pfam C2H2-type zinc finger 44 68 - -
Stsc242173g00001 206 Pfam C2H2-type zinc finger 100 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242173g00001 Stsc-Chr242173 13401 14166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242173g00001 1 194 C2H2 Transcription Factor Family AT2G37430 43.719 5.03e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc242173g00001 zf-C2H2_6 9.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242173g00001 - - qsa:O6P43_006763 179.104