Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242167g00001 ATGGAGAGATACAAAATTTTGAAAGAGCTTGGAGATGGTTCTTGCGGCCATGTATATAAAGCCCATGATACCAGAACTAATGAGATTGTTGCTGTCAAAAGGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATACACAAATGTAAGAGAAGTTAAGGCCCTCCGCAAGATGAATCACCCAAATATCATAAAATTGAGGGAGGTTATAAGCGAGAATAATGAATTGTTTTTCATTTTTGACTACATGGACTGTAATCTTTACCAATTAATAAAAGACAGAGAAAAGCCCTTTTCAGAGGAAGANNNNNNNNNNAGCTTTATGAAGCAAGTGCTACAAGGACTTAGCCACATGCACAAGAAAGGATTTTTTCATCGGGATTTAAAACCTGAGAATTTGCTCGTGACAAATGATGTTATTAAGATTGCTGATTTTGGCTTGGCTAGAGAAGTATCGTCGATGCCTCCTTACACTCAATATGTTTCTACGCGGTGGTACCGAGCTCCTGAAGTTTTGTTGCAATCCCCATGTTATACTCCTGCTGTTGACATGTGGGCTGTTGGTGCAATATTGGCTGAGCTTTTCACTTTGACCCCCATATTTCCGGGTGAAAGTGAGATAGACCAAATGTACAAAATATACCATGTTCTTGGCACACCAGATTTAACTGCATTCCCCATGGGAACAAACAATTCTCTGCTGTTGGAGCTTGTAGGTCATGAATTTGTTCCACCTATGAAGCTTTCTGATATCATTCCAAATGCTAGCTTGGAAGCTATAGATTTGATTTCACAACTCTTATCATGGGACCCATCAAGAAGACCAGATGCAGATCAGTCATTGCAACATCCTTTTTTCCATGTTGATACATGGGTTCCTTGTTCACTTCATCCCCGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGGCGAAGCCAAATCTTGAGCTGAAATTGCAGGATTTTGGCCCTGATCCCGATGATTGTTTTCTTGGCCTGACATTAGCAGTAAAGCCCAGTGTTCCAAACTATGACTTGGTTCACAATGTTTCTCAGGGCATGGGAGAGAATGTCCTATTTTGCTCGGATTTTAAAGATCATTCAGACCAGTCAGTATTTTGGACATTATTATCTCCTGATCAAAACGGAGTTCAGAATTCAGCAGAGACATCATTGTCGTTGTCATTGTCATACAGCTCGGTTCAGCATTCACCAATCGGAGTTCCGCAGTCAACAGGGTTTTCATTTCAGCCTATGCAGCCTAACATCTTAACAACACCATTTTTGGCTCTGTCTTCCCCATTCCAGCGTGGGCACTGCCTTTGA 1323 0.4097 MERYKILKELGDGSCGHVYKAHDTRTNEIVAVKRLKRKFCFWEEYTNVREVKALRKMNHPNIIKLREVISENNELFFIFDYMDCNLYQLIKDREKPFSEEXXXXSFMKQVLQGLSHMHKKGFFHRDLKPENLLVTNDVIKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLQSPCYTPAVDMWAVGAILAELFTLTPIFPGESEIDQMYKIYHVLGTPDLTAFPMGTNNSLLLELVGHEFVPPMKLSDIIPNASLEAIDLISQLLSWDPSRRPDADQSLQHPFFHVDTWVPCSLHPRDPLELKLSSKRAKPNLELKLQDFGPDPDDCFLGLTLAVKPSVPNYDLVHNVSQGMGENVLFCSDFKDHSDQSVFWTLLSPDQNGVQNSAETSLSLSLSYSSVQHSPIGVPQSTGFSFQPMQPNILTTPFLALSSPFQRGHCL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242167g00001 440 CDD STKc_MAK_like 4 285 - -
Stsc242167g00001 440 SUPERFAMILY Protein kinase-like (PK-like) 1 286 IPR011009 -
Stsc242167g00001 440 Gene3D Transferase(Phosphotransferase) domain 1 82 285 - -
Stsc242167g00001 440 FunFam Serine/threonine-protein kinase MHK 1 83 - -
Stsc242167g00001 440 FunFam Probable serine/threonine-protein kinase DDB_G0268078 83 292 - -
Stsc242167g00001 440 SMART serkin_6 4 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242167g00001 440 ProSiteProfiles Protein kinase domain profile. 4 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242167g00001 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Stsc242167g00001 440 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Stsc242167g00001 440 Pfam Protein kinase domain 4 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242167g00001 440 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242167g00001 Stsc-Chr242167 4686 12559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242167g00001 1 285 Core Cell Cycle Gene Families AT3G48750 37.075 1.67e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Stsc242167g00001 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242167g00001 K08829 K08830 gmx:100792842 756.133