Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242162g00002 ATGAAAGCCATGCCTCTGCTTCTTGGGTTCTTCTTCCTTGTTCTGGATTTTATCTATGTTAGTGCCTATGGTTATGGTGGTTGGATCAATGCACATGCCACATTCTATGGTGGCAGTGATGCTTCTGGAACAATGGGTGGAGCATGTGGTTATGGAAACTTGTACAGCCAAGGGTATGGAACAAATACAGCAGCACTGAGCACAGCATTGTTCAACAATGGATTAAGCTGTGGAGCATGTTATGAAATCAAGTGTGCAAATGATCCTCAATGGTGTTCATCCCCTGCATCTTCAATTGTTGTAACTGCCACTAACTTCTGTCCACCTGGTGGATGGTGTGATCCTCCAAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAGCAAATTGCTCACTATAAAGCTGGCATTATCCCTGTTATTTATAGAAGGGTGAGGTGCAAGAGAAGAGGGGGAATAAGGTTCAGCATAAATGGCCACTCATACTTCAATTTGGTGTTAGTAACAAATGTTGGAGGTGCTGGTGATGTGCATGGTGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCTTACTTGAATGGACAAAGCCTTTCATTCTTAGTCACCACAAGTAATGGCCACGGTGTGGTATCTTACAATGTTGCCCCTCCAACTTGGTCCTTTGGACAGACCTACACTGGAAGACAGTTCCCTTAA 738 0.439 MKAMPLLLGFFFLVLDFIYVSAYGYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEIKCANDPQWCSSPASSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAHYKAGIIPVIYRRVRCKRRGGIRFSINGHSYFNLVLVTNVGGAGDVHGVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSNGHGVVSYNVAPPTWSFGQTYTGRQFP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242162g00002 245 CDD DPBB_EXPA_N 27 147 - -
Stsc242162g00002 245 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Stsc242162g00002 245 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Stsc242162g00002 245 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Stsc242162g00002 245 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Stsc242162g00002 245 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Stsc242162g00002 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Stsc242162g00002 245 SUPERFAMILY Barwin-like endoglucanases 27 170 IPR036908 -
Stsc242162g00002 245 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Stsc242162g00002 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Stsc242162g00002 245 SMART dpbb_1 63 142 IPR007112 -
Stsc242162g00002 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 152 IPR007112 -
Stsc242162g00002 245 FunFam Expansin 18 148 - -
Stsc242162g00002 245 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Stsc242162g00002 245 Gene3D - 18 148 IPR036908 -
Stsc242162g00002 245 Gene3D - 152 244 IPR036749 -
Stsc242162g00002 245 PANTHER EXPANSIN-A15 17 244 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Stsc242162g00002 245 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Stsc242162g00002 245 FunFam Expansin 152 244 - -
Stsc242162g00002 245 Pfam Lytic transglycolase 63 142 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242162g00002 Stsc-Chr242162 9768 11820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242162g00002 28 244 Expansin Gene Family AT3G29030 83.410 3.67e-136 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242162g00002 K20628 - gmx:100791784 434.491