Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242161g00002 ATGGATGACATGGAAGACGACGCAAGGTACCCTCCAAAGTCCTTCCCTTTAAACCGCCAGAACCCTTCCCACCGCCACAAATACCCAGTTCGACCATCCCCATTCCACCACCAGAACCCCCGCTACGACGATGACGATTACGAAGACGAAGAAGAGCACGAAGAATTCGAAAACTACGGGAACGATGTCGTTGATAACACCAACGACGAAGACGATGATGACGACCTCGGTAACGGGGGGCAAAATGGGTTTTTCAAGAAAAGGAAGGTCGGGGTGGGAGGTTCCCCTGTTCCGACGGGATACGAGTTCGCGCCACGTGTCAAGTACTCGTACGGAGATGATTGGTCAGAGCATGCCACGTTCGTGCTTCTTGAGGTTTGGGGTGACAAGTTCCTGCAACTTGGGAGGACAAGTTTGAGGTCTGATGATTGGCACGAGGTTGCAGATAAGGTGTCTGATGAATTGAAATCTGTGAAGAGCGTTGCACAGTGCAAGAGCGTTTTGGATAAGCTCAAGAGAAGGTACAAGAAGGAGAAGGGAAAGGTTGAGGAGTTGGGTTTGGGTTCTTCCAAGTGGGCATTCTTCAAGAAGATGGATATGTTGATGGCTTCGTCGACAAGGCAAGAGTATCGTCTCGCTTGTGGCGTCGATGGTGGGGAGTATGTCTTCATGAACACAAGGGTGTACCTTAGTAGGTCCACTGGGTTTGATGAGATGAGGGATAGTCCGGGTGAGAGTGAGAGTGATGAGGATGAGGATGGTTTGGATGGTAGTGGTGGCGTTCGGGTTGTGGACGCGGCAAGGAGGAGGAGTGGTGTTGGTGGTGGTGAGGATGATGAGGAGGATGAGAGTTCGTATCGTGTGCTGGCGGATTCGATTCAGAAGTTCGGGAAGATATATGAGAAGATTGAGAATAGTAAGAGACAGCAGATGATGGAGTTGGAGAAGATGAGGTTGGATTTCAATAGGGAGCTTGAGCTGCAGAAGAAGCAGATATTGGAGAGGGCTCAGGCCGAGATTGCAAAGATTCAGGATGTGGATGAGGATGAAACCGACACTTCTACCGAGAATCTCAGTGAATGA 1083 0.5014 MDDMEDDARYPPKSFPLNRQNPSHRHKYPVRPSPFHHQNPRYDDDDYEDEEEHEEFENYGNDVVDNTNDEDDDDDLGNGGQNGFFKKRKVGVGGSPVPTGYEFAPRVKYSYGDDWSEHATFVLLEVWGDKFLQLGRTSLRSDDWHEVADKVSDELKSVKSVAQCKSVLDKLKRRYKKEKGKVEELGLGSSKWAFFKKMDMLMASSTRQEYRLACGVDGGEYVFMNTRVYLSRSTGFDEMRDSPGESESDEDEDGLDGSGGVRVVDAARRRSGVGGGEDDEEDESSYRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQDVDEDETDTSTENLSE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242161g00002 360 Coils Coil 300 342 - -
Stsc242161g00002 360 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 112 345 IPR044823 -
Stsc242161g00002 360 MobiDBLite consensus disorder prediction 1 91 - -
Stsc242161g00002 360 Pfam Myb/SANT-like DNA-binding domain 113 200 IPR044822 -
Stsc242161g00002 360 MobiDBLite consensus disorder prediction 44 77 - -
Stsc242161g00002 360 MobiDBLite consensus disorder prediction 340 360 - -
Stsc242161g00002 360 Gene3D - 115 177 - -
Stsc242161g00002 360 Coils Coil 161 181 - -
Stsc242161g00002 360 MobiDBLite consensus disorder prediction 235 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242161g00002 Stsc-Chr242161 3234 4524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242161g00002 113 342 Trihelix Transcription Factor Family AT1G54060 32.090 2.85e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc242161g00002 Myb_DNA-bind_4 5.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242161g00002 - - gmx:100790166 398.282