Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242155g00006 ATGGCTCTTGCATCAGATAATGATTCCAATGCAAAACTTGAAAAACAAGAAGACGATGCCTTTTTGTTTGCACAAATGGCATGTTCAATTGTGGTTCCAACGGCTGTGAGGACCACAATAGAGCTTGGTGTATTTGACATCATAGCCAAAGCAGGTGAAGGTGCAAAGCTCTCAGCACAAGACATTGTGGATCAAATTGGAACCAACAACCCTGAAGCAGCAACAATGTTGGATCGTGTTCTTAGGCTTCTTGCAAGTCACTCATTACTGTGTTGTTCTGTTGCTGAAGATCCACAAAACCCAAATGACTTGCAACAGAGGATTTATAGCCTCTTACCTGTTTCCAAATATTTTGTGACTGATGCTGATGGTGTGTCTTGGGGACCTTCTTTGGCGCATCTTTTGGATCAAGTCGTATATCCATGCTGGAATGAACTGAAAGGAGCGATCTTAGAAGGAGGTATACCATTCAACAGGATTTATGGTATGAATTTATTCGAGTATGCAAATGTTGATCCTCGATTCAACGAGGTTTTCAACAAAGCTATGCTCACATCCTCTACTCTATCAATGAAGAGGATTCTTGATGTCTACAAAGGCTTCGACCACGTCAATAAACTAGTTGACGTTGGTGGTGGTCTTGGGGCCAGTCTCAAATTGATTACTTCCAAATACCCTAATATCCAGGCTATCAATTTTGATTTGCCTCATGTTATAGAAAATGCCCCTCTCTATGCTGGTGTGGAGCACATAGGCGGAGATATGTTTGAGAGTGTTCCCAATGGAGATGCGATTTTCATGAAGAGCGTACTTCATGATTGGGATAACGAAGAATGCTTGAAGATTTTGAAGAATTGCCACAAAGCTATACCGAATGATGGGAAGGTGATTGTGGTGGATAAAGTTCTGCCTAGAATACCAGAGCAAAGCGATGTTGCTAAGATGGCTTTTAGATCTGATGTTTTCATGATGATTCAAACATCAAAAGGAATGGAACGAACCCAGAAAGATTTCATGGATTTGGCCAAAGCATCTGGATTTAGTACCATAAGATTCGTTTGTAGTGTTTCTACCTTTTGGGTCATGGAGTTCTACAAGCACTAG 1104 0.4112 MALASDNDSNAKLEKQEDDAFLFAQMACSIVVPTAVRTTIELGVFDIIAKAGEGAKLSAQDIVDQIGTNNPEAATMLDRVLRLLASHSLLCCSVAEDPQNPNDLQQRIYSLLPVSKYFVTDADGVSWGPSLAHLLDQVVYPCWNELKGAILEGGIPFNRIYGMNLFEYANVDPRFNEVFNKAMLTSSTLSMKRILDVYKGFDHVNKLVDVGGGLGASLKLITSKYPNIQAINFDLPHVIENAPLYAGVEHIGGDMFESVPNGDAIFMKSVLHDWDNEECLKILKNCHKAIPNDGKVIVVDKVLPRIPEQSDVAKMAFRSDVFMMIQTSKGMERTQKDFMDLAKASGFSTIRFVCSVSTFWVMEFYKH 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242155g00006 367 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 366 IPR016461 GO:0008168
Stsc242155g00006 367 PANTHER O-METHYLTRANSFERASE 26 364 IPR016461 GO:0008168
Stsc242155g00006 367 PIRSF O-mtase 1 366 IPR016461 GO:0008168
Stsc242155g00006 367 Pfam O-methyltransferase domain 143 348 IPR001077 GO:0008171
Stsc242155g00006 367 Pfam Dimerisation domain 36 85 IPR012967 GO:0046983
Stsc242155g00006 367 FunFam Caffeic acid O-methyltransferase 119 366 - -
Stsc242155g00006 367 Gene3D - 2 118 IPR036388 -
Stsc242155g00006 367 SUPERFAMILY "Winged helix" DNA-binding domain 17 121 IPR036390 -
Stsc242155g00006 367 Gene3D Vaccinia Virus protein VP39 119 366 IPR029063 -
Stsc242155g00006 367 FunFam Caffeic acid 3-O-methyltransferase 4 118 - -
Stsc242155g00006 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 364 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242155g00006 Stsc-Chr242155 31356 35236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242155g00006 17 366 Monolignol Biosynthesis Gene Families AT5G54160 50.142 9.54e-124 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242155g00006 K13066 - gmx:100789402 474.167