Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242152g00002 ATGATGCACTACTCTCATCATCATGTTCCTAATAAGTCCCTATTGTCATTCCTTGAAGAGAATAGCTCAACTCTTGAATTTCATCAATTTGTTGAGACCTATGGCTTCATGGTTGATAATTCACATATGGGTAATAATTTAGGGTTCAATAATTTCACTAATAATCCTTTGTTCAATAATAATATTCCACATAATAATAATATTATTACTTCTTCTAATGTTTCTTCCATCCCTTATGCTAATGATGTTGATACCTTATACCATAGCCCAATTGAAGAACAAGATTCCTTACAAACACTAATGGATTATTTTTCCATGGAATTGGACAATTCTAACCCCAATATTAATGGAAAAAACCAAAGTTATTACCAAGAAGAAAGTGGTGAGGGTAGCTTTTACCCCTCTTCACAAAACATTAGTGAAGAAGGGCAAAATGGTAATTGGAGCCCTACCACATCTTTGAATTCAGATTTGTCCTCATCATCATCAACTCAATTTCAACAACTTTTCTTGCCTCAACTAGGCATGGAAATTGACAAGAGGGTGGTGCTTCCACACATGGTGGAAGCTATTGGACAAGCTCTTGGAGAAGGTCACAAGTCACAAGTTCAAGAGATCTTGAGAAGCATGAGCAACAAAGCTAGCCCAATTGATGAGCCATTTGAGTTCTACTTGGCCCAAGGTGGTGGTGGTGATTACCTAAAACAAGAGGCTACTAAACACTTTGATGATTTGTTTAGGGCCTTGTACCAAGGGACCCCACATGGAAAAGTTGCAAACTTTGTTGCTAATTCAATCATTCTTGAAGCCATACCACATGATTGTGATGTTATACACATATTTGACTTTGATTTGTTAAATGGGGTTCAATGGCCTTCTATGATAGAAGCAATTGCACCCTTGAACAAAACATTGAAATTGACTTCAATCAAGAGTGTTGATGAAGGGTATGAATGTAATTTCCCTCAGTGGAGCTTTGAGGGAATTAAAAGACGCCTCTATGAGCATGCAAGATCATGTGGGCTTTTGAAATTGAAGGTGGAAGAGAAGGGAATAGAGGAAGTAGTTGTGGAGATCAAGAAAAAAGTCAACAAAAGGGGTGGGAAAAAGGAGTTTTTGGGCTTCAATTGCATGGTGGGCCTACCACATATGGGGAGAGAAAAGAGTAGAAAACATGTCATGGAGTTTCTAAATTTGATCCATCTTTGTGGCAACAAAAGGGCAATTTTGACTTTTGGTGATGGGGGTGCCTATGAGAAGTTGAGAAAGAATAATAATGGATTTGATTTCAAGTCATTTTATGATGGAAATTTGGTTCACTACAAGGCCTTGTTGGAATCAATTGAGTCACACTTCCCAGCATGTTCCTCAGATGCAAGAGCTGCTATTGAGTGCTTATTTTTGGCACCTAATATCTCTTCTCTCTCATGGTTGCAACAATGGGAGGAGGTGAGAGAGGGTTTCAATTTTCATGCAAAGATTGGATTGGAGGGTTGTGGATTAAGCCAAAGAAACTTGATGGAAGTTGGAGAGTTGTTGGAGGGTTGTGATGGTTCCTATGGGGCCAAAATTGAAGGGCAAAATGGAAATGAATTAGTGCTTCTGTGGAAAGGAATCCAGCTTTTAAGGGTTTCAGCATGGAGAAATTAG 1650 0.3855 MMHYSHHHVPNKSLLSFLEENSSTLEFHQFVETYGFMVDNSHMGNNLGFNNFTNNPLFNNNIPHNNNIITSSNVSSIPYANDVDTLYHSPIEEQDSLQTLMDYFSMELDNSNPNINGKNQSYYQEESGEGSFYPSSQNISEEGQNGNWSPTTSLNSDLSSSSSTQFQQLFLPQLGMEIDKRVVLPHMVEAIGQALGEGHKSQVQEILRSMSNKASPIDEPFEFYLAQGGGGDYLKQEATKHFDDLFRALYQGTPHGKVANFVANSIILEAIPHDCDVIHIFDFDLLNGVQWPSMIEAIAPLNKTLKLTSIKSVDEGYECNFPQWSFEGIKRRLYEHARSCGLLKLKVEEKGIEEVVVEIKKKVNKRGGKKEFLGFNCMVGLPHMGREKSRKHVMEFLNLIHLCGNKRAILTFGDGGAYEKLRKNNNGFDFKSFYDGNLVHYKALLESIESHFPACSSDARAAIECLFLAPNISSLSWLQQWEEVREGFNFHAKIGLEGCGLSQRNLMEVGELLEGCDGSYGAKIEGQNGNELVLLWKGIQLLRVSAWRN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242152g00002 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 163 538 IPR005202 -
Stsc242152g00002 549 ProSiteProfiles GRAS family profile. 175 548 IPR005202 -
Stsc242152g00002 549 MobiDBLite consensus disorder prediction 115 160 - -
Stsc242152g00002 549 Pfam GRAS domain family 244 548 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242152g00002 Stsc-Chr242152 10695 12433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242152g00002 246 548 GRAS Transcription Factor Family AT3G60630 24.383 4.71e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc242152g00002 GRAS 6.8e-30 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242152g00002 - - aip:107628481 852.047