Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242150g00003 ATGCCACAAAAACAAAACAAACACAACCATCTTGTGTTGTTCTCAGTTTCCAACTTTGATATGCAAGTAGCAGAACTCCATCAACAAAAGTTTCAACAACACCAACACAAACACAATAAAGAGAACAACAACAAGATCATGTGCAAGAAGATCCAGCTCAGTGTCTCTGCTGACACTGAACTCTATAACAATCACAACAGCAGCAATAATGATAATAATCATCATCATAGTTCATGTGGTTGTGATGTTGATGGGTGCCACAAGGTTGAGGGTGAGGATCTGTTCATTCCACCCCTCAATTTTGCAATGGTTGATAATGGCATTTTCAGGTCTGGTTTCCCTGAACCTGCTAACTTCTCCTTCCTTCAGACCCTTGGCCTCCGCTCTATCATATATCTATGTCCTGAGCCATATCCAGAGGCTAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCAATTTGGAATTGAGGGTCATAAGGAGCCTTTTGTAAACATCCCAGAAGACACAATCCGTGAAGCACTAAAAGTTGTCCTTGATGTCAGGAACCATCCACTAATAATTCATTGTAAGCGGGGAAAGCACCGAACAGGGTGTTTAGTGGGATGCTATAGGAAGATGCAAAAATGGTGTTTGTCTTCTGTGTTTGATGAATACCAACGCTTTGCAGCTGCAAAAGCAAGAGTTTCAGATCAGAGCTGA 708 0.4153 MPQKQNKHNHLVLFSVSNFDMQVAELHQQKFQQHQHKHNKENNNKIMCKKIQLSVSADTELYNNHNSSNNDNNHHHSSCGCDVDGCHKVEGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYQFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPLIIHCKRGKHRTGCLVGCYRKMQKWCLSSVFDEYQRFAAAKARVSDQS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242150g00003 235 FunFam probable tyrosine-protein phosphatase At1g05000 94 235 - -
Stsc242150g00003 235 ProSiteProfiles Dual specificity protein phosphatase domain profile. 100 235 IPR020422 GO:0006470|GO:0008138
Stsc242150g00003 235 PANTHER TYROSINE-PROTEIN PHOSPHATASE 59 234 - -
Stsc242150g00003 235 Gene3D Protein tyrosine phosphatase superfamily 94 235 IPR029021 -
Stsc242150g00003 235 Pfam Tyrosine phosphatase family 96 234 IPR004861 -
Stsc242150g00003 235 ProSitePatterns Tyrosine specific protein phosphatases active site. 190 200 IPR016130 GO:0016311|GO:0016791
Stsc242150g00003 235 CDD PFA-DSP_Siw14 94 234 - -
Stsc242150g00003 235 PRINTS Plant and fungal dual specificity phosphatase signature 95 112 IPR020428 GO:0016791
Stsc242150g00003 235 PRINTS Plant and fungal dual specificity phosphatase signature 151 165 IPR020428 GO:0016791
Stsc242150g00003 235 PRINTS Plant and fungal dual specificity phosphatase signature 132 145 IPR020428 GO:0016791
Stsc242150g00003 235 PRINTS Plant and fungal dual specificity phosphatase signature 168 182 IPR020428 GO:0016791
Stsc242150g00003 235 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 96 232 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242150g00003 Stsc-Chr242150 26898 32512 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242150g00003 91 234 Protein tyrosine phosphatase (PTP) family AT4G03960 77.778 4.23e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242150g00003 K18045 - gmx:100814279 306.605