Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242149g00006 ATGAGTAATAATACTAAGAAGATAACATGGAAATCAATGATTCTTATCCTAAGTTGTGGCAATTGCAAGAGTAGTAGTGAGTGCAATTTGGAAGAAGAAGAAGAAGAATCAGAGAAGAAAGTGTTGAAACAAGGGTCATTCCAGAGGCTATGTTTATCAGATGTGAGCAACTCAAGTTCATCACAAGCAATTGAAGATCTTTCAGTGTCACTGGGGGCTGGATCAAATAAGCTTTATACATTCACACTTGAGGAGTTAAGAGAAGCAACAAACAATTTCACATGGAGTAACATGCTTGGTGAAGGTGGTTTTGGTCCTGTTTACAAAGGCTTCTTTGATGATAAGCTTAGGCATGGCTTGAAGCCTCAAACTGTTGCTGTTAAAAGATTGGATTTAGATGGTTTGCAAGGTCATAGGGAGTGGCTGGCAGAGATTATATTTCTGGGGCAGCTAAGGCATCCACATCTTGTTAAGTTAATTGGTTATTGTTATGAAGATGAGAACAGGCTTCTGGTTTATGAATACATGCCAAGAGGAAGCTTGGAGAATCAACTCTTCAGAAGGTACTCTGCTGCCATGCCATGGTCAACAAGGATGAAAATTGCGTTAGGTGCAGCAAAAGGCTTGGCTTTCCTTCATGGAGCAGATAAACCTGTAATATATAGAGATTTCAAAGCTTCAAATATCTTGTTAGACTCAGTAAGTTACTGTATAAACATCTTCTTAAGGATCATCTTCAAGGTTCAAGAGTTTTAA 756 0.3849 MSNNTKKITWKSMILILSCGNCKSSSECNLEEEEEESEKKVLKQGSFQRLCLSDVSNSSSSQAIEDLSVSLGAGSNKLYTFTLEELREATNNFTWSNMLGEGGFGPVYKGFFDDKLRHGLKPQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDENRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHGADKPVIYRDFKASNILLDSVSYCINIFLRIIFKVQEF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242149g00006 251 Gene3D Transferase(Phosphotransferase) domain 1 176 244 - -
Stsc242149g00006 251 Pfam Protein tyrosine and serine/threonine kinase 95 235 IPR001245 GO:0004672|GO:0006468
Stsc242149g00006 251 FunFam Serine/threonine-protein kinase BIK1 56 175 - -
Stsc242149g00006 251 ProSiteProfiles Protein kinase domain profile. 93 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242149g00006 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Stsc242149g00006 251 Gene3D Phosphorylase Kinase; domain 1 52 175 - -
Stsc242149g00006 251 SUPERFAMILY Protein kinase-like (PK-like) 76 233 IPR011009 -
Stsc242149g00006 251 PANTHER OS01G0588500 PROTEIN-RELATED 53 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242149g00006 Stsc-Chr242149 33877 36458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242149g00006 80 232 Glycoside Hydrolase AT3G07070 53.846 6.77e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc242149g00006 PK_Tyr_Ser-Thr 1.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242149g00006 - - gmx:100802636 369.392