Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242149g00005 ATGAGTAATAATACTAAGAAGATAACATGGAAATCAATGATTCTTATCCTAAGTTGTGGCAATTGCAAGAGTAGTAGTGAGTGCAATTTGGAAGAAGAAGAAGAAGAATCAGAGAAGAAAGTGTTGAAACAAGGGTCATTCCAGAGGCTATGTTTATCAGATGTGAGCAACTCAAGTTCATCACAAGCAATTGAAGATCTTTCAGTGTCACTGGGGGCTGGATCAAATAAGCTTTATACATTCACACTTGAGGAGTTAAGAGAAGCAACAAACAATTTCACATGGAGTAACATGCTTGGTGAAGGTGGTTTTGGTCCTGTTTACAAAGGCTTCTTTGATGATAAGCTTAGGCATGGCTTGAAGCCTCAAACTGTTGCTGTTAAAAGATTGGATTTAGATGGTTTGCAAGGTCATAGGGAGTGGCTGGCAGAGATTATATTTCTGGGGCAGCTAAGGCATCCACATCTTGTTAAGTTAATTGGTTATTGTTATGAAGATGAGAACAGGCTTCTGGTTTATGAATACATGCCAAGAGGAAGCTTGGAGAATCAACTCTTCAGAAGGTACTCTGCTGCCATGCCATGGTCAACAAGGATGAAAATTGCGTTAGGTGCAGCAAAAGGCTTGGCTTTCCTTCATGGAGCAGATAAACCTGTAATATATAGAGATTTCAAAGCTTCAAATATCTTGTTAGACTCAGATTTTACGGCGAAACTCTCGGATTTCGGTCTGGCTAAGGATGGACCTGAAGGTGAAGATACACATGTAACAACAAGGATCATGGGAACACAAGGCTATGCTGCTCCTGAATACATCATGACAGATTGA 828 0.401 MSNNTKKITWKSMILILSCGNCKSSSECNLEEEEEESEKKVLKQGSFQRLCLSDVSNSSSSQAIEDLSVSLGAGSNKLYTFTLEELREATNNFTWSNMLGEGGFGPVYKGFFDDKLRHGLKPQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDENRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHGADKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTHVTTRIMGTQGYAAPEYIMTD 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242149g00005 275 Gene3D Phosphorylase Kinase; domain 1 53 175 - -
Stsc242149g00005 275 Gene3D Transferase(Phosphotransferase) domain 1 176 275 - -
Stsc242149g00005 275 SUPERFAMILY Protein kinase-like (PK-like) 76 275 IPR011009 -
Stsc242149g00005 275 ProSiteProfiles Protein kinase domain profile. 93 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242149g00005 275 PANTHER OS01G0588500 PROTEIN-RELATED 53 274 - -
Stsc242149g00005 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Stsc242149g00005 275 Pfam Protein tyrosine and serine/threonine kinase 95 273 IPR001245 GO:0004672|GO:0006468
Stsc242149g00005 275 FunFam Serine/threonine-protein kinase BIK1 56 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242149g00005 Stsc-Chr242149 33877 36458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242149g00005 80 274 Glycoside Hydrolase AT3G07070 56.061 4.02e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc242149g00005 PK_Tyr_Ser-Thr 4.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242149g00005 - - gmx:100802636 452.981