Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242149g00004 ATGAGTAATAATACTAAGAAGATAACATGGAAATCAATGATTCTTATCCTAAGTTGTGGCAATTGCAAGAGTAGTAGTGAGTGCAATTTGGAAGAAGAAGAAGAAGAATCAGAGAAGAAAGTGTTGAAACAAGGGTCATTCCAGAGGCTATGTTTATCAGATGTGAGCAACTCAAGTTCATCACAAGCAATTGAAGATCTTTCAGTGTCACTGGGGGCTGGATCAAATAAGCTTTATACATTCACACTTGAGGAGTTAAGAGAAGCAACAAACAATTTCACATGGAGTAACATGCTTGGTGAAGGTGGTTTTGGTCCTGTTTACAAAGGCTTCTTTGATGATAAGCTTAGGCATGGCTTGAAGCCTCAAACTGTTGCTGTTAAAAGATTGGATTTAGATGGTTTGCAAGGTCATAGGGAGTGGCTGGCAGAGATTATATTTCTGGGGCAGCTAAGGCATCCACATCTTGTTAAGTTAATTGGTTATTGTTATGAAGATGAGAACAGGCTTCTGGTTTATGAATACATGCCAAGAGGAAGCTTGGAGAATCAACTCTTCAGAAGGTACTCTGCTGCCATGCCATGGTCAACAAGGATGAAAATTGCGTTAGGTGCAGCAAAAGGCTTGGCTTTCCTTCATGGAGCAGATAAACCTGTAATATATAGAGATTTCAAAGCTTCAAATATCTTGTTAGACTCAGATTTTACGGCGAAACTCTCGGATTTCGGTCTGGCTAAGGATGGACCTGAAGGTGAAGATACACATGTAACAACAAGGATCATGGGAACACAAGGCTATGCTGCTCCTGAATACATCATGACAGGTCACCTTACAACCAAAAGTGACGTGTATAGCTACGGAGTTGTTCTGTTGGAACTAATAACAGGAAAAAGGGTAGTGGACAAGTCCCTAACAAATAGAGGGAAAAGCTTGGTGGGGTGGGCAAGGCCTATGTTAAGAGACTCAAAGAAATTGAAGCAAATCATAGATAGAAAATTGGAAGGTCAATTCCCCATGAAAGGTGCCATGAAGGTTGCTTCTTTGGCTTATAGATGCTTATGTCACCATCCAAATCCAAGGCCTACTATGAGTGATGTTGTGAAGACATTGGAGCCATTACAAGACTTTGATGATATTTTCATTGGGCCATTTGTGTATGTTGCCACCAATGAAAATGGAAACAAAGATTCAAGATAG 1197 0.4027 MSNNTKKITWKSMILILSCGNCKSSSECNLEEEEEESEKKVLKQGSFQRLCLSDVSNSSSSQAIEDLSVSLGAGSNKLYTFTLEELREATNNFTWSNMLGEGGFGPVYKGFFDDKLRHGLKPQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCYEDENRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHGADKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTHVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELITGKRVVDKSLTNRGKSLVGWARPMLRDSKKLKQIIDRKLEGQFPMKGAMKVASLAYRCLCHHPNPRPTMSDVVKTLEPLQDFDDIFIGPFVYVATNENGNKDSR 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242149g00004 398 Gene3D Phosphorylase Kinase; domain 1 53 175 - -
Stsc242149g00004 398 SUPERFAMILY Protein kinase-like (PK-like) 66 370 IPR011009 -
Stsc242149g00004 398 Gene3D Transferase(Phosphotransferase) domain 1 176 380 - -
Stsc242149g00004 398 Pfam Protein tyrosine and serine/threonine kinase 95 370 IPR001245 GO:0004672|GO:0006468
Stsc242149g00004 398 PANTHER OS01G0588500 PROTEIN-RELATED 54 374 - -
Stsc242149g00004 398 CDD STKc_IRAK 99 373 - -
Stsc242149g00004 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Stsc242149g00004 398 ProSiteProfiles Protein kinase domain profile. 93 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242149g00004 398 FunFam Serine/threonine-protein kinase BIK1 57 175 - -
Stsc242149g00004 398 FunFam Serine/threonine-protein kinase PBS1 176 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242149g00004 Stsc-Chr242149 33877 36458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242149g00004 80 370 Glycoside Hydrolase AT3G07070 53.401 4.29e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc242149g00004 PK_Tyr_Ser-Thr 2.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242149g00004 - - gmx:100802636 650.973