Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242144g00006 ATGGCTCAGGAAAATGTGAAGCTCTTGGGGGTTCTTGGAAGTCCGTTTGTTTGCAGGGTTCAGATTGCTCTAAAATTGAAGGGAGTTGAGTACGAGTTTGTGGCACAAGATTTGCAGAACAAGAGTGAAGAGCTCTTAAAATACAACCCAATTCACAAGAAGGTGCCAGTGCTTGTTCACAATGAAAAGCCCATAAATGAGTCACTTGTCATTGTTGAGTATATTGATGAGGCTTGGAAGGGTAAATCCATTTTGCCCACTGATCCTTACCAGAGAGCCTTGGCACGTTTCTGGGCCAAGTTCATAGATGACAAGGTTTTCGGTGCTGCCTGGAAATCTATTTTCACAATTGATGAGAACGAGCGTGAGAAGAACGTTAAAGAAGCACAAAAAGCTTTTCAGTTCCTTGAAGATGAGCTTAAAGGCAAATTTTTTGGAGGAGAGAAATTTGGCTTTGTGGACATTGCTGCTGTTTATATTACATTTTGGATACCTATGCTTCAAGAAATTGCAGGATTGGAATTGCTCACTAATGAAAAATTTCCCAAACTTTGCAAATGGAACCAAGAATTTCTTAGTGAGCCAACAATAAAAGAATCTTTGCCTCCTAGAGACCCAATTTTTGCCTTCTTCAAAGGTCTTTATGAAAAAATTCGTGCTTCAGCAAAATAG 672 0.3973 MAQENVKLLGVLGSPFVCRVQIALKLKGVEYEFVAQDLQNKSEELLKYNPIHKKVPVLVHNEKPINESLVIVEYIDEAWKGKSILPTDPYQRALARFWAKFIDDKVFGAAWKSIFTIDENEREKNVKEAQKAFQFLEDELKGKFFGGEKFGFVDIAAVYITFWIPMLQEIAGLELLTNEKFPKLCKWNQEFLSEPTIKESLPPRDPIFAFFKGLYEKIRASAK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242144g00006 223 Gene3D Glutaredoxin 1 87 - -
Stsc242144g00006 223 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Stsc242144g00006 223 CDD GST_C_Tau 89 214 IPR045074 GO:0004364|GO:0006749
Stsc242144g00006 223 FunFam Tau class glutathione S-transferase 1 87 - -
Stsc242144g00006 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 9 206 IPR045073 -
Stsc242144g00006 223 SFLD Glutathione Transferase (cytosolic) 2 221 IPR040079 -
Stsc242144g00006 223 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Stsc242144g00006 223 Gene3D - 88 222 - -
Stsc242144g00006 223 Coils Coil 119 139 - -
Stsc242144g00006 223 CDD GST_N_Tau 6 79 - -
Stsc242144g00006 223 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Stsc242144g00006 223 FunFam Tau class glutathione S-transferase 85 221 - -
Stsc242144g00006 223 Pfam Glutathione S-transferase, C-terminal domain 108 195 IPR004046 -
Stsc242144g00006 223 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Stsc242144g00006 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Stsc242144g00006 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 210 IPR010987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242144g00006 Stsc-Chr242144 27104 28234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242144g00006 3 221 Glutathione S-transferase Gene Family AT3G09270 52.252 8.40e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242144g00006 K00799 - gmx:100500680 336.265