Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242141g00005 ATGGATGCAAGTAGTTATTCGTTCGATTCAGAATCTGCTACTACAACAGATTCGATCGTGCAGTTTTGCTGTGATGTTGACGAGGAGTATATTCCAAAGGCTAGAATGACTTTTACAACACTTGAAGTAGTTGTTACTTTCTATAAAGAGTATGCTAAACGTGCTGGGTTTTCTACTAAAATAAGGAACACCAATAGGTGTAAGGATACCAAGGAAATAAAGAATCAACTCATCACATGTAACAGAGAATGGAAATGGATATCTGAAATACCGTACGTTGAGAAGACGAATCCTACGTGTCGTGCAAACTGTCCTGCATGA 321 0.3832 MDASSYSFDSESATTTDSIVQFCCDVDEEYIPKARMTFTTLEVVVTFYKEYAKRAGFSTKIRNTNRCKDTKEIKNQLITCNREWKWISEIPYVEKTNPTCRANCPA 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242141g00005 106 Pfam FAR1 DNA-binding domain 46 106 IPR004330 -
Stsc242141g00005 106 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 23 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242141g00005 Stsc-Chr242141 22788 23604 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc242141g00005 FAR1 2e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242141g00005 - - aip:110271906 103.605