Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242138g00002 ATGGCATGGAAACACAGAAAGCTCTTCCCATCACAAACAAACCAAACCCAAGATTGTTCTGGATTATGTGACCCTGCGTGTCCGTACAACTGTTACACCAACTACCCTGACTACTATCTTTCACCACCACCACCGCCAGCTTCTTCCACCGTCTCTGACCACTCCGGCAACCACATCTCCTCCTACTTAATCATCCTTGTATCGCTATTCTCCGCCATTTTTCTTCTCATCGGTCTATACGTCGTCAAGCTTAAATGCTATGCGGCCTGGTGCGGCAGGCGGAGGCCCGACAACGGCTCCGCCCGAGTGCAGTCGGACGACGAGTTTGTCAATGAAAATCAAGTTGATCATCCGGTGTGGCTAATCGCCACGGTTGGATTGCAACAGTCGATTATAAATTCTATAACCGCTTGCCGTTACAGAAAGGGCGACGGTTTGATCGAAGGAACAGATTGCTCTGTTTGCTTGAACGAGTTCCAAGAAGGTGAAACGTTGAGGCTGTTGCCGAAGTGTAGTCACGCTTTTCATATTCCGTGTATTGACACGTGGCTACGCTCTCATACCAATTGTCCTCTTTGCCGCGCTAGTATTGTTTCCAGCAATAATGCAATTTCTGAAACAAGGATTTCAAATTCCATTTCACTGGATCAAGAAACCAGTGGTGGTGGTGGTGGTGGTCATTTGGGAATGAATCTGAATCAAGAGCATTCGCAAAACGATAGAGGATTAAGTGGTGATAATTTGGCCATGGAAAACAGTGCTGGAACTGGGGAGGCCGGCGAGCTAGTTGAATTTGAAGGAGCATTCAATGATGAATTGACTTCAAAGGAGCGAGCCAATTCCGATACATGTCATAATGTTTCTTCTGAGGTTGATGGGATTCAGAATGATGAGATACAAAATGAGATTGTAGCGAGTTTGGGTTCTCACTCCACAGATCATATAGAAGATAGTGGGTAA 960 0.4625 MAWKHRKLFPSQTNQTQDCSGLCDPACPYNCYTNYPDYYLSPPPPPASSTVSDHSGNHISSYLIILVSLFSAIFLLIGLYVVKLKCYAAWCGRRRPDNGSARVQSDDEFVNENQVDHPVWLIATVGLQQSIINSITACRYRKGDGLIEGTDCSVCLNEFQEGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRASIVSSNNAISETRISNSISLDQETSGGGGGGHLGMNLNQEHSQNDRGLSGDNLAMENSAGTGEAGELVEFEGAFNDELTSKERANSDTCHNVSSEVDGIQNDEIQNEIVASLGSHSTDHIEDSG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242138g00002 319 MobiDBLite consensus disorder prediction 213 256 - -
Stsc242138g00002 319 MobiDBLite consensus disorder prediction 276 296 - -
Stsc242138g00002 319 FunFam RING-H2 finger protein ATL54 127 200 - -
Stsc242138g00002 319 SMART ring_2 152 193 IPR001841 -
Stsc242138g00002 319 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Stsc242138g00002 319 MobiDBLite consensus disorder prediction 231 251 - -
Stsc242138g00002 319 MobiDBLite consensus disorder prediction 280 296 - -
Stsc242138g00002 319 SUPERFAMILY RING/U-box 146 200 - -
Stsc242138g00002 319 PANTHER RING-H2 FINGER PROTEIN ATL16 49 290 IPR044600 GO:0016567|GO:0016740
Stsc242138g00002 319 CDD RING-H2_EL5-like 151 194 - -
Stsc242138g00002 319 SMART FANCL_C_2 148 201 - -
Stsc242138g00002 319 Pfam Ring finger domain 151 194 IPR001841 -
Stsc242138g00002 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 203 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242138g00002 Stsc-Chr242138 3062 4783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242138g00002 4 228 C3H Transcription Factor Family AT1G72220 47.809 3.44e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242138g00002 - - aprc:113847030 337.806