Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242137g00006 ATGGCGGCTGGTAGACATGGCGGCTATCGTGACAACGAGTTTAGGGACCGTGAGTCGAATTTGGATGTTTCAAGGCGCGGTTTCTCGAATTCAAAGGAAGATTATGACCGGGCTAGGAATGGAGGCCGTGATGTTGTGAGGGGTGGCAGCAGGGATGCAAGAGATAGGATTAGGGTTAGGCAGAAGGATATTAGGGAGAGAGATGCTTCCAATGGCAGTCACCGGTCATCTTCTAGTAGGAGTGATTCTGGCAGCAGCGTAGGTGGCGGTAGTGATGGTGGCGGGCTTGGCCCCCGACGGTGTGGCTTTTCTGCCAAGACCATGGATAGGGAGCCTGGTGAACTTTCCAGTGAGAGTGGGTCTGATGGTGCTATTGAGTCAGAGTCAGCGATGAAAGACAGTGAGGTTGCTAATGTTGAACACAATAGGACTCGATCCCCACCCCCACCAGAGAAGAAAAGAAAGTTTTCACCGATTGTGTGGGATCAGGATGACAAGGAAGTGAACGAGCCATCTAAATCCAAATCTAAGGTTTCCACTGCTGCAGTGACTGCTCTACCACCTCCGCCTCCACTGCCAAAATCATTCGAGCGGTCACCCAATGTTCCATTCGGTGGAGTTGAGATACATCCTGTTAAAAAGCGAGAAACTGAGGATGTTCAATTGCGGGAAGAAGCTACTAGGGCCACTATGCCTTCTCCAGGATCGCATTCCATATCTCCAAAACAGGCTTGGCATAATGATCGCGAAGCTGAGCAGCCAGATGGTGAGGATTTTGTTCCTAGTCGTAATATATCATCTTCGAGATGGGCAGCTGTAGATAACTCTCCTGGTGATGAGGGTGAAATCATCGATGATGAGGAATTGTCTAGGAGGAAGAGGAGGCTGTCTCCAGAGTTGTTGGATACAAGACTAAGGAACAAGCTGTTGAGCCCAGTGGAATCTAAAAGAGAAGGAGATGGTGGCAGGGCTAAATCATCTGAATCTGATGAACGAGGTAGTCATGGTAGAACGTCCAGTGGGGATGATCATCCTGGAACTGCATCAGAGAAGGATGACTACATGGAGATTGATGCTCAAGGTGGAAAAAGTGATACCAGTATCAGTCATTCTGAGACGGATTCTGAGGATGAAGATGATAGGAGGGAAACTCCAGAACCTCCAGCACCACCACAAAGAATGGTTAACATGCTTCAAGGTTGTAGAAGTGTTGATGAGTTTGAAAGACTTAACAAGATAGATGAAGGAACTTATGGTGTTGTATATAGGGCCAGAGATAAGAAGACTGGAGAAATTGTAGCATTGAAGAAAGTCAAGATGGAGAAGGAAAGAGAAGGGTTCCCACTGACTTCACTTAGGGAAATCAACATTCTTCTTTCTTTCCACCACCCATCCATAGTTGATGTTAAGGAAGTAGTGGTAGGAAGTAGTCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTAAAGGTCTAATGGAAGCAATGAAGCAACCATTTAGCCAGAGTGAAGTAAAATGCTTAATGATCCAGCTTTTAGAAGGTGTTAAGTATCTTCATGATAACTGGGTGCTTCATAGGGATTTAAAAACTTCTAACCTCCTTTTGAATAATAGAGGTGAGCTAAAAATATGTGATTTTGGGTTAGCTCGACAGTATGGGAGTCCATTGAAACCATACACACATCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTGGGGTCAAAACAATATTCAACAGCCATTGACATGTGGTCTCTAGGTTGTATAATGGCGGAGCTATTGTCCAAAGAACCACTATTCAATGGGAAAACAGAATTTGATCAGCTTGATAAGATTTTTAAGATTCTTGGCACACCTAACGAAACAATTTGGCCTGGGTTCTCAAAATTACCTGGAGTCAAGGTCAATTTTGTCAAGCACCAGCTTCCAACTTTGGGTGGTTCTGGTCTGGCTATCTGGCCTCTCTTGGTGATTTGTTCTATTTCTGAACTTTCCTTTTTGTATTGA 2028 0.4482 MAAGRHGGYRDNEFRDRESNLDVSRRGFSNSKEDYDRARNGGRDVVRGGSRDARDRIRVRQKDIRERDASNGSHRSSSSRSDSGSSVGGGSDGGGLGPRRCGFSAKTMDREPGELSSESGSDGAIESESAMKDSEVANVEHNRTRSPPPPEKKRKFSPIVWDQDDKEVNEPSKSKSKVSTAAVTALPPPPPLPKSFERSPNVPFGGVEIHPVKKRETEDVQLREEATRATMPSPGSHSISPKQAWHNDREAEQPDGEDFVPSRNISSSRWAAVDNSPGDEGEIIDDEELSRRKRRLSPELLDTRLRNKLLSPVESKREGDGGRAKSSESDERGSHGRTSSGDDHPGTASEKDDYMEIDAQGGKSDTSISHSETDSEDEDDRRETPEPPAPPQRMVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGSKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFKILGTPNETIWPGFSKLPGVKVNFVKHQLPTLGGSGLAIWPLLVICSISELSFLY 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242137g00006 675 SMART serkin_6 407 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 1 394 - -
Stsc242137g00006 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Stsc242137g00006 675 SUPERFAMILY Protein kinase-like (PK-like) 399 645 IPR011009 -
Stsc242137g00006 675 ProSiteProfiles Protein kinase domain profile. 407 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242137g00006 675 FunFam cyclin-dependent kinase G-2 isoform X1 392 489 - -
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 8 73 - -
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 133 173 - -
Stsc242137g00006 675 FunFam Cyclin-dependent kinase G-2 490 655 - -
Stsc242137g00006 675 CDD STKc_CDC2L1 401 648 IPR045267 GO:0004674|GO:0005524|GO:0006468
Stsc242137g00006 675 PANTHER CELL DIVISION PROTEIN KINASE 405 638 - -
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 243 257 - -
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 309 359 - -
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 369 387 - -
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 209 225 - -
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 74 88 - -
Stsc242137g00006 675 Pfam Protein kinase domain 407 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242137g00006 675 Gene3D Transferase(Phosphotransferase) domain 1 490 653 - -
Stsc242137g00006 675 MobiDBLite consensus disorder prediction 285 302 - -
Stsc242137g00006 675 Gene3D Phosphorylase Kinase; domain 1 392 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242137g00006 Stsc-Chr242137 16141 19463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242137g00006 398 638 Core Cell Cycle Gene Families AT5G10270 52.344 4.15e-86 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Stsc242137g00006 Pkinase 2.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242137g00006 K08818 - gmx:100792524 941.028