LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc242136g00002	ATGGCTGTTGAGCTCATGATGAGTGGTTACAGGAACGAAAACAGCAGCAGCAGCGGCTTCGTCACTTCCAAGGCTGAAGAGAACGCCGTCCAAGAAGCGGCGTCTGGGTTAGAGAGCGTTGAGAAGCTCATAAGGCTTCTCTCACAGACTCAGCACCAACGCTTTAACGGCGCTTCTTCTTCGTCTTCTTCTGCCGTTAACTCCGATGATACGGCGTTATCAATCGAGAGAGACTGCAAGGCCGTTGCGGACGTCGCCGTTTCCAAGTTCAAGAAAGTTATCTCTCTCCTTGGCCGAACTAGAACCGGTCACGCGCGTTTCAGAAGAGGACCTCTTCACGCGCCTTCTCAGCCTGAACCATCGTCGACTCAGGAACACAGGGTCTTCCATGCGACGCCGCTGCAGCAGATCCCACCCCCTCCGCCTCCACCACCGCCACCGCAACCACAACCACAACCACAGAGCCTCGTTAACCACCACCTGATTCCCAAAAACGGCGTCGTTGAGAGATCGTCTTCGTCCAAGACTATTAACTTCTCGTACTCATCTGCTGCTAACTCGTTCTTGTCGTCTCTCACCGGCGACGCCACCGCCGCCGGTGAAGCCAAGCAGCAGAACCACCACCAGCAACAGCCGTCGTCGTCGTCGCCGGTACCGGCGTTTCAGTTCACTAACGTGTCGCAGGTTTCGTCGGCGGGGAAGCCACCTCTGTCGTCGTCTTCGCTGAAGAGGAAGTGCAGCTCGGAGAATTTGGGTTCGGGAAAGTGTGGAAGCTCCTCTAGCCGCTGCCATTGCTCCAAAAAGAGCCGGAAAATGAGGATGAAAAGGGTGGTGAGGGTACCGGCAATAAGCTTGAAAATGGCTGATATTCCGCCGGATGATTATTCTTGGAGGAAGTACGGTCAAAAACCCATTAAAGGATCCCCTCATCCAAGGGGCTATTACAAGTGCAGCAGCGTTAGAGGGTGTCCAGCGAGGAAGCATGTGGAGAGGGCTCTTGATGATCCGTCTATGCTGGTAGTCACATATGAAGGAGAACATAATCACTCCCTCACTGCAGCTGATGCTACTAATCTCATCCTAGAATCCTCTTGA	1095	0.5388	MAVELMMSGYRNENSSSSGFVTSKAEENAVQEAASGLESVEKLIRLLSQTQHQRFNGASSSSSSAVNSDDTALSIERDCKAVADVAVSKFKKVISLLGRTRTGHARFRRGPLHAPSQPEPSSTQEHRVFHATPLQQIPPPPPPPPPPQPQPQPQSLVNHHLIPKNGVVERSSSSKTINFSYSSAANSFLSSLTGDATAAGEAKQQNHHQQQPSSSSPVPAFQFTNVSQVSSAGKPPLSSSSLKRKCSSENLGSGKCGSSSSRCHCSKKSRKMRMKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLTAADATNLILESS	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc242136g00002	364	MobiDBLite	consensus disorder prediction	134	153	-	-
	Stsc242136g00002	364	SUPERFAMILY	WRKY DNA-binding domain	288	351	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242136g00002	364	MobiDBLite	consensus disorder prediction	9	23	-	-
	Stsc242136g00002	364	MobiDBLite	consensus disorder prediction	196	263	-	-
	Stsc242136g00002	364	MobiDBLite	consensus disorder prediction	196	270	-	-
	Stsc242136g00002	364	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	30	357	IPR044810	GO:0003700
	Stsc242136g00002	364	Pfam	WRKY DNA -binding domain	293	349	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242136g00002	364	MobiDBLite	consensus disorder prediction	116	130	-	-
	Stsc242136g00002	364	ProSiteProfiles	WRKY domain profile.	286	352	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242136g00002	364	MobiDBLite	consensus disorder prediction	105	157	-	-
	Stsc242136g00002	364	Pfam	Plant zinc cluster domain	243	289	IPR018872	-
	Stsc242136g00002	364	SMART	WRKY_cls	291	351	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242136g00002	364	Gene3D	WRKY domain	276	352	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Stsc242136g00002	364	FunFam	WRKY transcription factor 65	275	352	-	-
	Stsc242136g00002	364	MobiDBLite	consensus disorder prediction	1	23	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc242136g00002	Stsc-Chr242136	30291	32429	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc242136g00002	26	349	WRKY Transcription Factor Family	AT2G24570	44.311	2.28e-71	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Stsc242136g00002		WRKY	3.7e-26	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc242136g00002	-		-	qsa:O6P43_033850	404.445