Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242135g00004 ATGCCTCATAGAGCAACTTACATTTTCCCTAGGCAATTCCCGGAGAGAGGGTTGGATGAGTCTGCGAGGCAGAGATTGGATCACGAGAAGAAGAGACTCGTCAACTCTATCAAATCACCTGATAATAATAATAATAACAATACTTTCGGCGCTGAAAGCGACATCGTGTCTACAACAACTGCAACTGACACACCTGTTACTACAGCTCCTCTCGCCAAAGACGACGTCGTCGTTTTTCCATCGGGGAAACACTCGGCTGTTTCTGACCTCTTCGCCGGTGCCGGCGTTTCCGGAGTAGGTAGGTTCAGGAGAAAGAGCAAGCAAATCGCCGCTTTCTGTGACTGGATCAACGATAAGAAGCGTGATTCTGGTAATCGATTGGATCATCGCCGCCGTCTCTTGACGGCGGCGGAGGAGGAGGAGCATGACGAGCACGAGATGTTGCTTCCTCCATTGGTGGCGACGGAGACTGTCAAAGATTCCAGCAGCAGCGGAGGCGTTGACCAGAGCTTCGATCGGCAGGTGTCGCTGCCGCGGTTGTCGAGTGGAAGCAGCTACGCCGGGAGCTTGTTCTCCGGAACGACGACGTTCGATGGCACGGCCACATTCTCCAGCGACATTAACACCAAAGATGAAACCTCTTCCTCCGAAGCAACAAGGAAGCACCACCACGATGAAGAAGAAGAGCAATATCACAACAACAACAACGATAACGGTTATGCTAGAAAGTACAGAGAAAGCTACTACCTCCAAGTCACGTTAGCGAAGAGTCTCACTTGCTTAGCAAGCCTCACCAACGAACCCGTTCTCATCACCGCAACCGAAACTTGGGATGCTGAATCCGTTTCTTATCGTTTATGGGTGAGTGGGTGCTTGTCGTACACGGATAAGATATCGGATGGTTTTTACAACATTCTTGGTATGAATCCGTACTTGTGGGTGATGTGCAATGAGAACGAAGAAGGGAAGAAGCTACCGACGCTGACTGCGCTGAAAGCAGTTGAGCCGAGCGAAACGTCAATGGAGGTTGTCGTCATTGATAGGAATCAAGACTCTCAGCTTAAGCAGCTTATGGAGAAAGCGCAGGAGCTGTATTGTGAATCCAAGAACTCATTGGTGCTGGTTGAGCAACTCAGCAAGTTAGTTGCCGTATGCATGGGGGGTACCTTTCCGGTGGAGCAAGGGGATCTACACAAGCGGTGGAAGATGGTTAGCAAGAGGTTGAGAAGTTTTCATCATTCGGTTGTGCTTCCTATTGGAAGCTTGTCTACTGGTCTTTGCAGGCATCGGGCCATTCTTTTTAAGAGATTGGCAGATTATATAGGTTTGCCATGTCGCATTGCTAAAGGATGTAGGTACTGTGCTTCAGATCATAGATCCTCTTGTCTTGTCAAGATTAAAGATGACAGGCAGCACTTAAGGGAATATGTTGTGGACCTAGTTGGAGAACCAGGAACTGTCCACGGGCCAGATTCCTCAATCAATGGAGCATATTTGTCATCCATTCCTTCTCCATTTCAAATTTCTCATTTAAAGGAATGCCAATCTCCATATTTGGCCAGTGAAGTATGTACCCAATCAGTAAATTCAAATCTTACAGGTTGTGTACAGGAAGGTCCTCAAGTAAAAGATACTAATTTGCTGAAAAATTATAAGAACTCCATTTTTGCTTCGGTTGATCAAAATTCTGGAGGTGTTTCTGAAAGTGTTCGCCCAGCCTCTGTAGCATCGCATGAATATTCTGGAATTGCTAAAGATAAGGTGGCAGCACAAGACATTTCTAACAATGAGATTATTATGAAGGAAAGTTCTGGAGCAAAAACCACTTCTAAGCAATCTATACATAGCACAACCAGCCAGTTAGCACAGGAGAAGGTAGGCAATAGACATGAGAACCAAGATGGTGCTGGAAATATTCCAAGATACGTGAATCTTGAACCATCACTTGCAATGGACTGGTTAGAGATCGCATGGGAAGATTTACGTATCAAAGAGCGTATTGGTGCTGGATCATTTGGGACAGTGTACCGAGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTTTAACAGTTCAAGATTTTCATGATGATCAGTTGAAGGAGTTTTTAAGAGAGGTTGCAATAATGAAACGCGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAAAACGTCCCCATCTGTCTATAATTACAGAGTATTTGCCTCGGGGTAGTCTATTCCGCCTGATACATAGGCCAGCATCCGGTGAAATTCTTGATCCGAGGAGACGACTACGGATGGCTTTAGATGTGGCTAAAGGGATAAATTATCTCCATTGTCTGAAGCCTCCAATAGTGCACTGGGATCTCAAATCTCCAAACCTGTTGGTGGACAGAAATTGGACAGTAAAGGTGTGTGATTTCGGATTATCCAGATTTAAGGCGAACACTTTCATATCATCAAAATCTGTTGCTGGGACACCTGAATGGATGGCCCCAGAATTTCTTCGTGGAGAACCATCGAATGAGAAGTCTGATGTTTACAGTTTCGGTGTCATCATGTGGGAACTTGTTACCCTGCAACAACCATGGAGTGGACTTAGTCCTGCCCAGGTCGTTGGAGCTGTGGCTTTCCAGAATAGAAGGCTTGCTATCCCTCCAAACATCTCCCCGGTGTTGGCATCTGTTGTGGAATCTTGTTGGGCCGATAACCCTGCAGATCGCCCATCTCTTCCTAGCATAGTTGAGTCACTAAAGAAGCTGCTAAAGTCCCCTGCAGATTCCATCAAAATGGGTGAGACATAA 2796 0.4628 MPHRATYIFPRQFPERGLDESARQRLDHEKKRLVNSIKSPDNNNNNNTFGAESDIVSTTTATDTPVTTAPLAKDDVVVFPSGKHSAVSDLFAGAGVSGVGRFRRKSKQIAAFCDWINDKKRDSGNRLDHRRRLLTAAEEEEHDEHEMLLPPLVATETVKDSSSSGGVDQSFDRQVSLPRLSSGSSYAGSLFSGTTTFDGTATFSSDINTKDETSSSEATRKHHHDEEEEQYHNNNNDNGYARKYRESYYLQVTLAKSLTCLASLTNEPVLITATETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNENEEGKKLPTLTALKAVEPSETSMEVVVIDRNQDSQLKQLMEKAQELYCESKNSLVLVEQLSKLVAVCMGGTFPVEQGDLHKRWKMVSKRLRSFHHSVVLPIGSLSTGLCRHRAILFKRLADYIGLPCRIAKGCRYCASDHRSSCLVKIKDDRQHLREYVVDLVGEPGTVHGPDSSINGAYLSSIPSPFQISHLKECQSPYLASEVCTQSVNSNLTGCVQEGPQVKDTNLLKNYKNSIFASVDQNSGGVSESVRPASVASHEYSGIAKDKVAAQDISNNEIIMKESSGAKTTSKQSIHSTTSQLAQEKVGNRHENQDGAGNIPRYVNLEPSLAMDWLEIAWEDLRIKERIGAGSFGTVYRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIITEYLPRGSLFRLIHRPASGEILDPRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDRNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVIMWELVTLQQPWSGLSPAQVVGAVAFQNRRLAIPPNISPVLASVVESCWADNPADRPSLPSIVESLKKLLKSPADSIKMGET 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242135g00004 931 SUPERFAMILY Protein kinase-like (PK-like) 640 914 IPR011009 -
Stsc242135g00004 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Stsc242135g00004 931 SMART serkin_6 661 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242135g00004 931 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 203 920 - -
Stsc242135g00004 931 ProSitePatterns Protein kinases ATP-binding region signature. 667 688 IPR017441 GO:0005524
Stsc242135g00004 931 Gene3D Transferase(Phosphotransferase) domain 1 740 927 - -
Stsc242135g00004 931 Gene3D Phosphorylase Kinase; domain 1 654 738 - -
Stsc242135g00004 931 ProSiteProfiles Protein kinase domain profile. 661 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242135g00004 931 FunFam Serine/threonine-protein kinase isoform 1 651 739 - -
Stsc242135g00004 931 CDD STKc_MAP3K-like 667 915 - -
Stsc242135g00004 931 FunFam Serine/threonine-protein kinase CTR1 740 925 - -
Stsc242135g00004 931 MobiDBLite consensus disorder prediction 604 626 - -
Stsc242135g00004 931 MobiDBLite consensus disorder prediction 213 233 - -
Stsc242135g00004 931 PRINTS Tyrosine kinase catalytic domain signature 842 864 IPR001245 GO:0004672|GO:0006468
Stsc242135g00004 931 PRINTS Tyrosine kinase catalytic domain signature 776 794 IPR001245 GO:0004672|GO:0006468
Stsc242135g00004 931 PRINTS Tyrosine kinase catalytic domain signature 886 908 IPR001245 GO:0004672|GO:0006468
Stsc242135g00004 931 PRINTS Tyrosine kinase catalytic domain signature 735 748 IPR001245 GO:0004672|GO:0006468
Stsc242135g00004 931 Pfam Protein tyrosine and serine/threonine kinase 661 915 IPR001245 GO:0004672|GO:0006468
Stsc242135g00004 931 Pfam Ethylene-responsive protein kinase Le-CTR1 279 487 - -
Stsc242135g00004 931 MobiDBLite consensus disorder prediction 202 239 - -
Stsc242135g00004 931 MobiDBLite consensus disorder prediction 604 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242135g00004 Stsc-Chr242135 28977 35565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242135g00004 1 929 MAP Kinase Kinase Kinase AT4G24480 55.888 0.0 1020
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc242135g00004 PK_Tyr_Ser-Thr 2.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242135g00004 - - gmx:100786546 1289.25