Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242133g00003 ATGTGGAGGTCGCAATCGCCAGATGAATCGGTATCCAATCGAGAAAGTGTAAAGGAGGAAGCAACCGATGAACCCGAATCTTCGTTGCCTGTCCAGAACAAACCTCCTGAGCAGTTAACTATGCCAAAACCAGAGTCGAAAGAAAAAACAAAACCAGAAACGAAGTCAGAAGTGGAAAAGGAACCGGAACAGGAGAAACAGGAGAAGAATAAACACCGGAAACCAGCTTCAGTGAAGAGAGTTTCGAGTGCTGGGCTTCGTGTCAATTCTGTTTTACAAAGAGAGACTGGTAGTTTCAAGGAGTTCTACAGTTTGGGAAGAAAACTTGGACAGGGTCAGTTTGGGACTACATTTTTATGTGTTGAGAAGGCAACAGGACATGAATTTGCTTGTAAGTCCATTGCAAAGAGAAAGCTGGTAAATGACGAGGATGTCGAGGATGTGAGGAGAGAAATCCAGATAATGCATCACTTGTCTGGGCATCCGAATGTTATTTCCATTAAAGGTGCTTATGAGGATGCGATAGCGGTTTACGTTGTGATGGAACTATGTGCAGGAGGTGAGCTTTTCGATAGGATTATTCAGCGTGGACACTACACTGAAAGAAAGGCCGCCGATCTTATCCGGACCATAGTTGGGGTTGTGGAAGCTTGTCATTCTCTTGGTGTGATGCATAGAGACCTTAAACCTGAGAATTTTCTCTTTGTGAATCAACACGAGGATGCACTTCTCAAAACCATTGACTTCGGATTATCCGTGTTCTTTAAGCCAGGTGATATATTTAATGATGTGGTTGGCAGCCCATATTATGTTGCCCCTGAAGTTCTGCGAAAGAGGTACGGTCCTGAAGCAGATGTTTGGAGTGCTGGAGTTATCCTGTATATTCTTTTGAGTGGAGTTCCTCCATTTTGGGCAGAAAATGAACAAGGAATATTCGAACAGGTTCTGCGTGGTGATCTTGATTTCTTGTCAGATCCCTGGCCTGCAATTTCAGAAAGTGCCAAAGATTTAGTAAGGAAAATGCTTGTTCGTGATCCTAGAAGGCGGATGACTGCCCATCAAGTACTATGTCATCCATGGATTCAAGTTGATGGTGTTGCTCCTGACAAGCCACTTGATTCTGCTGTATTAAGTCGCCTGAAACAATTTTCTGCTATGAATAAACTCAAGAAAATGGCTCTTATAGTTATTGCTGAGAGCTTATCTGAAGAAGAAATAGCTGGCTTGAAGGAAATGTTCAAGATGATAGATACAGACAACAGTGGTCAAATAACTTTTGATGAACTTAAAGCTGGATTGAAAAGAGTTGGTGCTAATCTTAAGGAGTCTGAGATCTATGATTTAATGCAAGCAGCTGATGTAGATAACAGTGGAACAATTGATTACGGCGAGTTCATTGCTGCAACGTTGCATCTTAACAAGATTGAAAGAGAAGACCATTTATTTGCAGCCTTTTCATACTTCGATAAAGATGGAAGTGGTTATATTACCCCAGATGAACTTCAACAGGCATGTGATGAGTTTGGCATTGAAGATGCCCGCTTGGAAGAGATAATCAAGGAAATCGATCAGGATAATGATGGGCGCATAGATTATAATGAGTTTGTGGCTATGATGCAGAATGGAAATCTTCCTATGGTTGGTAGAAAGGGCCTAGAACATAGCTTTGGTTTCAGGGAGGCATTAAAACTATAA 1695 0.4183 MWRSQSPDESVSNRESVKEEATDEPESSLPVQNKPPEQLTMPKPESKEKTKPETKSEVEKEPEQEKQEKNKHRKPASVKRVSSAGLRVNSVLQRETGSFKEFYSLGRKLGQGQFGTTFLCVEKATGHEFACKSIAKRKLVNDEDVEDVRREIQIMHHLSGHPNVISIKGAYEDAIAVYVVMELCAGGELFDRIIQRGHYTERKAADLIRTIVGVVEACHSLGVMHRDLKPENFLFVNQHEDALLKTIDFGLSVFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLSGVPPFWAENEQGIFEQVLRGDLDFLSDPWPAISESAKDLVRKMLVRDPRRRMTAHQVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALIVIAESLSEEEIAGLKEMFKMIDTDNSGQITFDELKAGLKRVGANLKESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKIEREDHLFAAFSYFDKDGSGYITPDELQQACDEFGIEDARLEEIIKEIDQDNDGRIDYNEFVAMMQNGNLPMVGRKGLEHSFGFREALKL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242133g00003 564 SUPERFAMILY EF-hand 401 540 IPR011992 -
Stsc242133g00003 564 Pfam Protein kinase domain 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242133g00003 564 FunFam Calcium-dependent protein kinase SK5 189 373 - -
Stsc242133g00003 564 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Stsc242133g00003 564 SMART serkin_6 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242133g00003 564 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Stsc242133g00003 564 MobiDBLite consensus disorder prediction 41 72 - -
Stsc242133g00003 564 ProSiteProfiles EF-hand calcium-binding domain profile. 512 545 IPR002048 GO:0005509
Stsc242133g00003 564 Pfam EF-hand domain pair 409 469 IPR002048 GO:0005509
Stsc242133g00003 564 Pfam EF-hand domain pair 479 540 IPR002048 GO:0005509
Stsc242133g00003 564 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Stsc242133g00003 564 Gene3D - 386 545 - -
Stsc242133g00003 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Stsc242133g00003 564 ProSitePatterns EF-hand calcium-binding domain. 523 535 IPR018247 -
Stsc242133g00003 564 FunFam Calcium-dependent protein kinase 1 369 543 - -
Stsc242133g00003 564 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Stsc242133g00003 564 CDD EFh 409 468 IPR002048 GO:0005509
Stsc242133g00003 564 ProSiteProfiles Protein kinase domain profile. 103 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242133g00003 564 SUPERFAMILY Protein kinase-like (PK-like) 102 362 IPR011009 -
Stsc242133g00003 564 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Stsc242133g00003 564 MobiDBLite consensus disorder prediction 1 82 - -
Stsc242133g00003 564 SMART efh_1 408 436 IPR002048 GO:0005509
Stsc242133g00003 564 SMART efh_1 514 542 IPR002048 GO:0005509
Stsc242133g00003 564 SMART efh_1 480 508 IPR002048 GO:0005509
Stsc242133g00003 564 SMART efh_1 444 472 IPR002048 GO:0005509
Stsc242133g00003 564 PANTHER SERINE/THREONINE-PROTEIN KINASE 94 535 - -
Stsc242133g00003 564 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Stsc242133g00003 564 Gene3D Phosphorylase Kinase; domain 1 105 188 - -
Stsc242133g00003 564 ProSitePatterns Protein kinases ATP-binding region signature. 109 136 IPR017441 GO:0005524
Stsc242133g00003 564 FunFam Calcium-dependent protein kinase 1 105 188 - -
Stsc242133g00003 564 CDD EFh 480 540 IPR002048 GO:0005509
Stsc242133g00003 564 CDD STKc_CAMK 102 360 - -
Stsc242133g00003 564 Gene3D Transferase(Phosphotransferase) domain 1 189 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242133g00003 Stsc-Chr242133 20968 27207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242133g00003 1 564 EF-hand Containing Proteins AT5G04870 77.273 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc242133g00003 Pkinase 8.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242133g00003 K13412 - gmx:100819792 972.615