Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242131g00003 ATGGACCCGAAGTTCATGGCAAAGCCACCACCGCCCTCCACCGTCGACATAGAACGCATGCCGGAGCGTGGCTCTCACCACCGCCGCTCCCACTCCGACACCTCTTTCCGCTTCGCTGGAAACTTCGACGACCTCCTCCTCTTCGACCCTTCCGACCTCGACATCTCCAACCTCCCTTCTCCTCTCCCTCTTCCCACCCCTGCCACCGCAAGCGGCGGAGGAAGCGGCGGCGTTCCCATGGCTATCGATTCTGACGAGTCTAGCGGCCAGAGCGGGATGGGGAGAGTCGGTGGCGGTGCTCCGATGGGCCACCTACGGAGCTTGTCAGTTGACTCGGACTTCTTCGATGGTTTGGGGTTCGGCGGCGGCGGAGAGGGGAAAAGCAGCGGCGGCGGTGGAGGGGGAGGAGGAGGAGAGAGAATAGTTGGACATCACCGGCATAGTAATTCGATGGATGGATCATCAACGACGTCGTTTGAAGCAGAGTCATCGATGTTGGATGGTGTGAAGAAAGCCATGGCTCCTGATAAGCTCGCTGAGCTTGCTCTTATCGATCCCAAGCGAGCCAAGAGGATTCTTGCGAATCGGCAATCAGCTGCGAGATCAAAGGAGAGAAAGATTCGGTATACGAGTGAACTTGAGAAGAAGGTGCAGACTCTTCAGACTGAAGCAACTAACCTCTCTGCTCAACTTACCATGCTCCAGAGAGACACTACAGATTTAACTGCAGAGAACAAGGAGCTAAAACTGCGGTTAGAGGCTATGGAACAAGAAGCTCAGCTTAGAGAAGATCTGAATTCGGCTTTGAAGGAAGAATTGCAGCGCCTTAGGGAACAGAGTACCCGTTTGGGTGCTATGAGTGGTGGTAACCATAATTTTGGTGGTATGTTCTCTCAATTGGCTTCTCAATTAGCCATGCAACAGTTGAATAGTCATCCTCCGACGACGCAACAGCCACAGGTCGGCATGCCTCCTCATCCCTCTGATCAGCCTTTCCGCGGCCAGCACCGCCCGAACTTCATGGACTTCAATCAGAAGAAGTAG 1044 0.545 MDPKFMAKPPPPSTVDIERMPERGSHHRRSHSDTSFRFAGNFDDLLLFDPSDLDISNLPSPLPLPTPATASGGGSGGVPMAIDSDESSGQSGMGRVGGGAPMGHLRSLSVDSDFFDGLGFGGGGEGKSSGGGGGGGGGERIVGHHRHSNSMDGSSTTSFEAESSMLDGVKKAMAPDKLAELALIDPKRAKRILANRQSAARSKERKIRYTSELEKKVQTLQTEATNLSAQLTMLQRDTTDLTAENKELKLRLEAMEQEAQLREDLNSALKEELQRLREQSTRLGAMSGGNHNFGGMFSQLASQLAMQQLNSHPPTTQQPQVGMPPHPSDQPFRGQHRPNFMDFNQKK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242131g00003 347 SMART brlzneu 183 247 IPR004827 GO:0003700|GO:0006355
Stsc242131g00003 347 MobiDBLite consensus disorder prediction 308 347 - -
Stsc242131g00003 347 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700|GO:0006355
Stsc242131g00003 347 Pfam bZIP transcription factor 187 245 IPR004827 GO:0003700|GO:0006355
Stsc242131g00003 347 MobiDBLite consensus disorder prediction 19 34 - -
Stsc242131g00003 347 Coils Coil 210 286 - -
Stsc242131g00003 347 MobiDBLite consensus disorder prediction 56 76 - -
Stsc242131g00003 347 FunFam Transcription factor VIP1 186 239 - -
Stsc242131g00003 347 SUPERFAMILY Leucine zipper domain 187 239 IPR046347 GO:0003700|GO:0006355
Stsc242131g00003 347 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700|GO:0006355
Stsc242131g00003 347 Gene3D - 186 240 - -
Stsc242131g00003 347 MobiDBLite consensus disorder prediction 1 16 - -
Stsc242131g00003 347 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 326 - -
Stsc242131g00003 347 MobiDBLite consensus disorder prediction 121 158 - -
Stsc242131g00003 347 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242131g00003 Stsc-Chr242131 7770 10141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242131g00003 11 346 bZIP Transcription Factor Family AT1G43700 46.814 3.42e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc242131g00003 bZIP_1 1.8e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242131g00003 K20557 - gmx:778142 407.142