Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242131g00002 ATGGGGTTCATCAATTTGGTTCTCTTATTGATCCTTTCATTGTTTGTGGTATCAATTGTGGTGTTGATGTACCTTACACGTTCTCCTAAGGAAATGAAAGGCATTCCAGGTAACCTTGGATGGCCAATTTTGGGTGAGACTCTCTCATTCATCTCTGACTTTTCAAGTCCAGCTGGTATCTTTAGCTTCATGTACAACAGACAACAAAGATATGGAAAGGTATTCAAGAGCTTTGTGTTGGGGAGGTTCACAGTGTTCATGACAGGGAGAGAAGCAAGCAAGATATTACTAACTGGGAAAGATGGGATTGTCAGCTTGAACCTGTTTTACACTGGCCAGCAAGTTCTTGGCCCCACCAGTTTGTTGCAAACCAATGGAGAAGCACACAAAAGGCTTAGGAGGCTCATTGCTGAACCTTTGTCAATTGATGGCCTTAAAAAATACTTCCATTTCATTAATACTCAAGCAATGGAAACCTTGGATCATTGGCAAGGAAGGAAAGTCCTTGTCCTTGAAGAAGCTTCCACATTTACTCTGAAAGTGATTGGACATATGATCATGAGCTTAGATCCAACAAGTGAGGAGCAAGAGAAGTTTCGGTCGAATTTCAAGGTTATCTCTTCTTCATTCTCCTCCATGCCTATCAAGCTTCCAGGAACAGCTTTCCATCGCGGTATCAAGGCTCGAGATAGGATGTATGAGATGTTGGATTCTATAATTGCGCGGCGAAGAAGTGGCCAAGAGTTCCAGCAAGATTTCTTGGAGTCCTTGATTATGAAACATAGCAAAGGAGGAGGAAAAGAAGATGATGATGAGAACAAGCTCACTGACAAACAGTTGAAGGACAATGTACTAACTCTGTTGGTTGCAGGACATGATACCACAACTGCTGCTCTAACATGGCTCATCAAATTTCTTGAAGAAAACCATGATGTTCTTGAACAACTCAGGGAGGAACATAGACAAATTGTTGCAAATAGAAAGATTGGAACAGATCTTACATGGTCTGAAGTTAATAACATGCCTTACACAACCAAAGTCATCAGCGAAACCCTTCGACGAGCGACGATATTGCCTTGGTATTCAAGAAAAGCATCCCAGGATTTCGAAGTTGATGGATACAAAATTAAGAAAAGTTGGTCAGTTAATCTTGATGTTGTTTCTATACACCATGACCCTGAAGTGTTTCCAGATCCTCAAAGATTTGACCCTTCAAGATTTGATGAGCCTTTAAGGCCTTTCAGCTTTCTTGGATTTGGAAGTGGACCACGTATGTGTCCTGGAATGAACCTTGCCAAGATTGAAATCTGTGTCTTCATCCACCACCTTGTTACCAGATACAAGTGGAAGCCTCTAGATAGAGATAATTCCGTCCAACCAACACTTGTGAGGATGCCAAAGAACAAGTATCCTGTTATGGTGGAGCCACTGTAA 1434 0.4163 MGFINLVLLLILSLFVVSIVVLMYLTRSPKEMKGIPGNLGWPILGETLSFISDFSSPAGIFSFMYNRQQRYGKVFKSFVLGRFTVFMTGREASKILLTGKDGIVSLNLFYTGQQVLGPTSLLQTNGEAHKRLRRLIAEPLSIDGLKKYFHFINTQAMETLDHWQGRKVLVLEEASTFTLKVIGHMIMSLDPTSEEQEKFRSNFKVISSSFSSMPIKLPGTAFHRGIKARDRMYEMLDSIIARRRSGQEFQQDFLESLIMKHSKGGGKEDDDENKLTDKQLKDNVLTLLVAGHDTTTAALTWLIKFLEENHDVLEQLREEHRQIVANRKIGTDLTWSEVNNMPYTTKVISETLRRATILPWYSRKASQDFEVDGYKIKKSWSVNLDVVSIHHDPEVFPDPQRFDPSRFDEPLRPFSFLGFGSGPRMCPGMNLAKIEICVFIHHLVTRYKWKPLDRDNSVQPTLVRMPKNKYPVMVEPL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242131g00002 477 Gene3D Cytochrome P450 26 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 CDD CYP90-like 67 476 - -
Stsc242131g00002 477 SUPERFAMILY Cytochrome P450 29 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 419 428 IPR017972 GO:0005506|GO:0016705
Stsc242131g00002 477 PRINTS P450 superfamily signature 417 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS P450 superfamily signature 290 307 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS P450 superfamily signature 426 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 Coils Coil 303 323 - -
Stsc242131g00002 477 Pfam Cytochrome P450 36 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PANTHER CYTOCHROME P450 26 33 457 - -
Stsc242131g00002 477 PRINTS E-class P450 group I signature 299 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS E-class P450 group I signature 426 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS E-class P450 group I signature 416 426 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS E-class P450 group I signature 279 296 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 PRINTS E-class P450 group I signature 345 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc242131g00002 477 FunFam Cytochrome P450 family 722 subfamily A polypeptide 1 25 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242131g00002 Stsc-Chr242131 3240 6136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242131g00002 8 457 Cytochrome P450 AT5G45340 35.463 2.61e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242131g00002 - - aip:107644926 889.797