Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242124g00001 ATGGCTACTACCAAGTTCAGACATGTCTTTGGTAGATTATGGGGTTTTGCTACTTCTTGTAAGAAAAGCAGCAGCAGCAACCCAATTGGCACAAGAATTCTCCAAAGGGATGTGGAAAAGGAAGAGTTTCAGTTTGCTAGTACTCTCTGCCTCTCATCATACTATAGTGTCTTTGTGGTTCGCCTTGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTTCTTACAATACTAACATGGCATTTCACAAAGATTTATACAACAAAATCTCTTAATAGCTTAGCGTATGACTTGCGTTATGAGCTTCTACAACGCCCAATCTTGAGGATGTGGAACATTTTGAACTCTACTTCTGAGATTACAATAGCTCAGGTCAAGCTTTCTCAGTATGTGATTAGAAGCCATGGAAATCTTACCACTCAAGAAGACCAAGTTGAGATGTATGAAGCAATGAGAGCAGTAACATGGGCACTTTTTGCTAGTAGAAAAGCTCTTAATTCAATCACTGTCAAATACAACAATGGTTTTGTTCAAGCATTCCATAGAGACATTAAGGACAACAACACATTCTACATTTACTCTGATCTTGATAATTATTCTATCGGTGCAAGTGGCTATAATAACAGTGAGCTTAATTACTCATCACTTTCCTCACAAGAATCTTCTTGGAATGATAATGACAACAAGTCTACAGTTTGGTATCGCCAGCCGCTGGATCCTGTCACCGGCGAAAGGATCGGAAAGCCAATGCAGATTGCCCCAGAAGACTCAATCCACATAGCAGGCCTATCCCAAGTGCCTGATGGGGTGGCATCATGGCGAGTCGCCGTGAGCAAGTTCACAGATTCGCCATTGCTTTCGGCTGCATTGCCAGTTTGGGATTCTTCTAACAAGAGCATTGTGGCCGTCGTGGGAGTAACAACTGCACTTTATAGTGTAGGACAGTTGATGAAGGAGCTTGTTGAGTTGCATAGTGGCCATATGTATTTGACTTCTCTAGAAGGCTACTTGCTCGCAACTTCCACCGATGCACCTCTTCTCGATAATTCAACACAGCCACCTAAGCTTAAGATGGCTGTAGATTGTGAAAATGAAGTGATAAGACTTGGAGCTGAGTATTTGAGGAGAAGTTCTGGTAACAAATTCCCTCCAAGCCACGAGGTTCATGTGGCGAATGTCAGGCTAGGCCACGACCGATATTATATCGACTCGTTCTTCCTAAACTTGAAGAGACTTCCTCTGGTTGGTGTGATAATCATACCAAGAAAGCATATATTGGGACAAGTAGATGAAAGAGCCTTTAAGACTTTGGTGATTCTGATATCTGCATCAATGTGTATTATAGTCATTGGATGGGTTTGTATTTTGATTTTGACAAATGGAGTCTCAAAGGAAATGAAATTAAGAGCAGAACTTATTAGTCAGCTTGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAGAGTCAATTTCTTGCAAACATGAGCCATGAACTTAGGACACCTATGGCTGCAATAATCGGATTACTCGACATTCTTATGTCCGATGACTGCCTCACGAATGAGCAGTGTGCAACGGTTACTCAGATAAGAAAATGCTCGACCGCACTGCTCCGGCTTCTTAATAACATCTTGGATATCAGCAAGGTGGAATCAGGAAAGCTTGTTCTAGAAGATGCTGAATTCGATTTGGGAAGGGAACTTGAAGGACTTGTGGATATGTTTTCTGTGCAATGCATCAATCACAGTGTAGAGACTGTCTTAGACCTATCTGATGATATGCCGAAGCTAGTTCGTGGCGACTCTGCTAGAGTAGTCCAAATTTTCGCGAATTTGATCAACAACTCAATTAAGTTCACTCCTTCGGGTCATGTTATTCTGAGAGGATGGTTTGAGAATCCAAATCCTTGCAGTGATAGTGCAAATTTTCTGATGGAAGAGAAGAAACTACAGTGTGCACAAAAGACTAGAGCAAAGCAATATGAGAATCATGCAAAGAGAACATCTGAGAGGGACAAAAAAGCAGTCCTATGGTTTGAAGTCGATGACACCGGCTGCGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACTACAAGACTGCATGGAGGCACTGGCCTTGGTCTTTGCATTGTCAGAAGCTTGGTTAATAAGATGGGTGGAGAAATCAAAGTTGTCAAAAAAGAAGGCCCCGGAACTCTGATGCAATTATACCTGCGTCTCGATACAGCCGGGGATGACACAGAACAACATTGTTTAGTAGACATTGCAAACAACGGCTTAGTGGTATTGCTTGCACTGCACGGCAACATAGGAAGATCAATCACATCTAAGTGGCTGCAGCAAAATGGGGTGTTCACAATGGAGGCATCCGAATGGAATGGATTAACACAGATTCTAAGGGAACTCTTTCATACAAGAAGTTCGTCAGGAACTAACAATGGTTTTGATGTACATTATCCAATTCCGGAGAGTTTGAAGTCCAGATTACTTAGCATACAAGAAATCAGGCATCCGGTTTTTGTCATCGCTGTCGACATAGGACTACTCGACTTGAGCACAGATATATGGAAGGAACAGCTTAACTTTCTTCACCGATACTTGGGGCTGGCGAAGTTTATATGGGTCCTAAACCATGACACCTCCAACACCATTAAATTGGAGCTTAGAAGAAAAGGATATATGATGACAGTTAGCAAACCACTTTACAAAGCAAAAATTGTTCACATTTTGGAGGAAGTTATAAAAGAGAGGAATCATGAGATGCAAAAGAAGAACATGGATGAGCTTCATGTTCATGAGAGTGATTATACTCATTGTGATGCTGCTAGCTCGGACGATTCTGACATATCCGAATCTGCTCCTTGTAATCCTGTTAGTAGTACTGAGAAGTTTGAGCAATTTGATCTATTATCTCGGTATAGGATAAACAACTGCTTAATAGGATTAACCGATGAACATTCGGAAGTTAAGACTCCAAGGAAGGAGGATTCATATCAAAATAACCACAACTCTCCAAAATCATTGTCTGCAGAACAAGCATATTTTCCAAGAGAAGCTCATCAAGGTGAAGATTCTGAAAGCAGAGGCAAAGAAGAGCATAGGATCATCCGCGGCTTGGGTAGACCGGCAAACGGAAAGAAATCCCTTGAAGGGTTAAGGATATTGCTTGCAGAAGACACACCTGTGATTCAAAGGGTTGCAACCATAATGCTTGAAAAGATGGGAGCAAGTGTTGTAGCTGTTGGTGATGGACAGCAAGCAGTGGATGCTTTGAATGACATGCTTGGTGTTGAAGATTTCAGAAGAGACTCAAACTTGAATGAAAGAAACACAAGATCATCATCACCTCAAACTGAAATTCTCAGTTTCCCTTCATATGACTTGGTCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAAGTGGGAAGTGGAGTTCACATTCCAATAGTTGCTCTCACTGCTCATGCAATGTCATGTGATGAAGCCAAGTGCTTAGAAGTTGGAATGGATGCTTATTTAACCAAACCAATTGACTTCAAATTGATGGAATCCACTATTCTTTCACTCACAAGAAAAACAACTTCCTGA 3654 0.4146 MATTKFRHVFGRLWGFATSCKKSSSSNPIGTRILQRDVEKEEFQFASTLCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTSEITIAQVKLSQYVIRSHGNLTTQEDQVEMYEAMRAVTWALFASRKALNSITVKYNNGFVQAFHRDIKDNNTFYIYSDLDNYSIGASGYNNSELNYSSLSSQESSWNDNDNKSTVWYRQPLDPVTGERIGKPMQIAPEDSIHIAGLSQVPDGVASWRVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSLEGYLLATSTDAPLLDNSTQPPKLKMAVDCENEVIRLGAEYLRRSSGNKFPPSHEVHVANVRLGHDRYYIDSFFLNLKRLPLVGVIIIPRKHILGQVDERAFKTLVILISASMCIIVIGWVCILILTNGVSKEMKLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAIIGLLDILMSDDCLTNEQCATVTQIRKCSTALLRLLNNILDISKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHSVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTPSGHVILRGWFENPNPCSDSANFLMEEKKLQCAQKTRAKQYENHAKRTSERDKKAVLWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMQLYLRLDTAGDDTEQHCLVDIANNGLVVLLALHGNIGRSITSKWLQQNGVFTMEASEWNGLTQILRELFHTRSSSGTNNGFDVHYPIPESLKSRLLSIQEIRHPVFVIAVDIGLLDLSTDIWKEQLNFLHRYLGLAKFIWVLNHDTSNTIKLELRRKGYMMTVSKPLYKAKIVHILEEVIKERNHEMQKKNMDELHVHESDYTHCDAASSDDSDISESAPCNPVSSTEKFEQFDLLSRYRINNCLIGLTDEHSEVKTPRKEDSYQNNHNSPKSLSAEQAYFPREAHQGEDSESRGKEEHRIIRGLGRPANGKKSLEGLRILLAEDTPVIQRVATIMLEKMGASVVAVGDGQQAVDALNDMLGVEDFRRDSNLNERNTRSSSPQTEILSFPSYDLVLMDCQMPKMDGYEATKAIRKSEVGSGVHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRKTTS 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242124g00001 1217 CDD HisKA 489 550 IPR003661 GO:0000155|GO:0007165
Stsc242124g00001 1217 Gene3D - 553 756 IPR036890 -
Stsc242124g00001 1217 FunFam Histidine kinase 1-like protein 476 555 - -
Stsc242124g00001 1217 Pfam Response regulator receiver domain 1129 1205 IPR001789 GO:0000160
Stsc242124g00001 1217 SUPERFAMILY CheY-like 1061 1213 IPR011006 -
Stsc242124g00001 1217 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 543 750 IPR036890 -
Stsc242124g00001 1217 ProSiteProfiles Response regulatory domain profile. 1064 1212 IPR001789 GO:0000160
Stsc242124g00001 1217 ProSiteProfiles Histidine kinase domain profile. 495 753 IPR005467 -
Stsc242124g00001 1217 PRINTS Bacterial sensor protein C-terminal signature 737 750 IPR004358 GO:0016310|GO:0016772
Stsc242124g00001 1217 PRINTS Bacterial sensor protein C-terminal signature 678 692 IPR004358 GO:0016310|GO:0016772
Stsc242124g00001 1217 PRINTS Bacterial sensor protein C-terminal signature 713 731 IPR004358 GO:0016310|GO:0016772
Stsc242124g00001 1217 PRINTS Bacterial sensor protein C-terminal signature 696 706 IPR004358 GO:0016310|GO:0016772
Stsc242124g00001 1217 Gene3D - 457 552 - -
Stsc242124g00001 1217 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 601 752 IPR003594 -
Stsc242124g00001 1217 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 476 555 IPR036097 GO:0000155|GO:0007165
Stsc242124g00001 1217 SMART HKATPase_4 601 753 IPR003594 -
Stsc242124g00001 1217 Pfam His Kinase A (phospho-acceptor) domain 489 554 IPR003661 GO:0000155|GO:0007165
Stsc242124g00001 1217 CDD REC_hyHK_CKI1_RcsC-like 1065 1208 - -
Stsc242124g00001 1217 Gene3D - 1050 1212 - -
Stsc242124g00001 1217 PANTHER TWO-COMPONENT HISTIDINE KINASE 45 758 - -
Stsc242124g00001 1217 SMART REC_2 1063 1208 IPR001789 GO:0000160
Stsc242124g00001 1217 SMART HisKA_10 488 554 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242124g00001 Stsc-Chr242124 6828 12982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242124g00001 5 1213 Histidine Kinase Gene Family AT2G17820 62.663 0.0 1484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc242124g00001 HATPase_c 2.5e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242124g00001 - - gmx:100801970 1824.29