Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242121g00005 ATGATGAAAACAAATGATGTATTACATTTGTTTTGCAATAACAGGGAGAAGGACCTGGATGAAGTGTTGCAGTCACACACAGTTTATTCCAATGTTTCCAAAGGAGTTCTTGCCAAGTCAAAGGATTTGAATGCTGCTTTTGGGACTGATGATCAGACCAAGATATGCTTAGAGATTTTGAAGAAAGGGGAACTTCAGGTTGCTGGGAAGGAGAGGGAATCCTTGCTGTCAAGTCAGTTCAGAGATATTGCCACCATTGTGATGCAAAAGACATACAATCCTGAGGCGCAGCGACCTTACACTATTAGCATGATTGAGCGTCTCATGAGGGATATTCATTTTGCTGTTGATCCAAATAGCAGTTCCAAGAAGCAGGCTTTGGAGTTGATTCAGGAGCTTCAAAAGCACTACCCTATAAAGCGATGTCCATTAAGAGTACGAGTTGCTGCTCCTGAGGAGGAAGTGCCTGCGCTTTTAGAAAAGCTGAATGAGTGGAAGTCTACCATTATTTCTAAAGAAGGATCATCTGGTCAGCTATCTGTTATCTTTGAATTGGAACCTGGGCTATATAAGGGTTGTCATGACTTCGTTGTGAACAACATGCATGGAAGATTTGAGGTTCTTGCACACTCTCTTTATGTGGATGGGGATACCCAGGTAGAACAATACANNNNNNNNNNAGATATGCCTCCATCGTTGGCCAAAGAAACTCGGGAATTTGTGCTTGAACTGAATGATAAACTTCAAAAGCAGACGATTTCATCTACGAGTAGGCCTCCTCCTGAGATGCAACAACAAAAGGCAAACAAGTGCAGCACATGCAATGTTTCTTTTGAGGACCCTAAGCAGTATAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGCAAGACAAGGCAACTCCCACCCCTCACCGAGGAAGAGTGCTTGACAGACATGGAACTGGGGGACTCAAAATCTGATTTGAAGGATTATTCATTTTGA 993 0.426 MMKTNDVLHLFCNNREKDLDEVLQSHTVYSNVSKGVLAKSKDLNAAFGTDDQTKICLEILKKGELQVAGKERESLLSSQFRDIATIVMQKTYNPEAQRPYTISMIERLMRDIHFAVDPNSSSKKQALELIQELQKHYPIKRCPLRVRVAAPEEEVPALLEKLNEWKSTIISKEGSSGQLSVIFELEPGLYKGCHDFVVNNMHGRFEVLAHSLYVDGDTQVEQYXXXXDMPPSLAKETREFVLELNDKLQKQTISSTSRPPPEMQQQKANKCSTCNVSFEDPKQYREHHKSEWHKHNMKRKTRQLPPLTEEECLTDMELGDSKSDLKDYSF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242121g00005 330 Pfam SBDS protein, domain II 81 141 IPR018978 GO:0042254
Stsc242121g00005 330 MobiDBLite consensus disorder prediction 285 330 - -
Stsc242121g00005 330 PANTHER RIBOSOME MATURATION PROTEIN SBDS 5 212 IPR039100 -
Stsc242121g00005 330 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 11 72 IPR019783 -
Stsc242121g00005 330 Gene3D - 70 142 IPR037188 -
Stsc242121g00005 330 Gene3D - 144 221 - -
Stsc242121g00005 330 MobiDBLite consensus disorder prediction 315 330 - -
Stsc242121g00005 330 SUPERFAMILY beta-beta-alpha zinc fingers 259 300 IPR036236 -
Stsc242121g00005 330 FunFam SBDS, ribosome maturation factor 70 142 - -
Stsc242121g00005 330 SUPERFAMILY FYSH domain 11 66 IPR036786 -
Stsc242121g00005 330 ProSitePatterns Zinc finger C2H2 type domain signature. 271 293 IPR013087 -
Stsc242121g00005 330 ProSitePatterns Uncharacterized protein family UPF0023 signature. 16 35 IPR018023 -
Stsc242121g00005 330 NCBIfam ribosome assembly factor SBDS 11 195 IPR002140 GO:0042256
Stsc242121g00005 330 SUPERFAMILY Hypothetical protein AF0491, middle domain 68 141 IPR037188 -
Stsc242121g00005 330 Gene3D - 1 66 IPR036786 -
Stsc242121g00005 330 Pfam SBDS protein, C-terminal domain 145 208 IPR046928 -
Stsc242121g00005 330 Gene3D Classic Zinc Finger 260 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242121g00005 Stsc-Chr242121 18304 21093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242121g00005 12 330 C2H2 Transcription Factor Family AT1G43860 60.000 2.34e-142 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc242121g00005 SBDS_C 9e-28 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242121g00005 K14574 - gmx:100797497 521.546