Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242121g00004 ATGTCTCGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGCTAACTAATGTAGCCGTCGTGCGACTCAAGAAGCACGGCATGCGATTTGAGATTGCCTGCTACCCGAATACCGTCCTCGCCTGGCGTTCGGGCGTGGAGAAGGACCTGGATGAAGTGTTGCAGTCACACACAGTTTATTCCAATGTTTCCAAAGGAGTTCTTGCCAAGTCAAAGGATTTGAATGCTGCTTTTGGGACTGATGATCAGACCAAGATATGCTTAGAGATTTTGAAGAAAGGGGAACTTCAGGTTGCTGGGAAGGAGAGGGAATCCTTGCTGTCAAGTCAGTTCAGAGATATTGCCACCATTGTGATGCAAAAGACATACAATCCTGAGGCGCAGCGACCTTACACTATTAGCATGATTGAGCGTCTCATGAGGGATATTCATTTTGCTGTTGATCCAAATAGCAGTTCCAAGAAGCAGGCTTTGGAGTTGATTCAGGAGCTTCAAAAGCACTACCCTATAAAGCGATGTCCATTAAGAGTACGAGTTGCTGCTCCTGAGGAGGAAGTGCCTGCGCTTTTAGAAAAGCTGAATGAGTGGAAGTCTACCATTATTTCTAAAGAAGGATCATCTGGTCAGCTATCTGTTATCTTTGAATTGGAACCTGGGCTATATAAGGGTTGTCATGACTTCGTTGTGAACAACATGCATGGAAGATTTGAGGTTCTTGCACACTCTCTTTATGTGGATGGGGATACCCAGGTAGAACAATACANNNNNNNNNNAGATATGCCTCCATCGTTGGCCAAAGAAACTCGGGAATTTGTGCTTGAACTGAATGATAAACTTCAAAAGCAGACGATTTCATCTACGAGTAGGCCTCCTCCTGAGATGCAACAACAAAAGGCAAACAAGTGCAGCACATGCAATGTTTCTTTTGAGGACCCTAAGCAGTATAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGCAAGACAAGGCAACTCCCACCCCTCACCGAGGAAGAGTGCTTGACAGACATGGAACTGGGGGACTCAAAATCTGATTTGAAGGATTATTCATTTTGA 1083 0.4524 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLAWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLNAAFGTDDQTKICLEILKKGELQVAGKERESLLSSQFRDIATIVMQKTYNPEAQRPYTISMIERLMRDIHFAVDPNSSSKKQALELIQELQKHYPIKRCPLRVRVAAPEEEVPALLEKLNEWKSTIISKEGSSGQLSVIFELEPGLYKGCHDFVVNNMHGRFEVLAHSLYVDGDTQVEQYXXXXDMPPSLAKETREFVLELNDKLQKQTISSTSRPPPEMQQQKANKCSTCNVSFEDPKQYREHHKSEWHKHNMKRKTRQLPPLTEEECLTDMELGDSKSDLKDYSF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242121g00004 360 Gene3D - 100 172 IPR037188 -
Stsc242121g00004 360 ProSitePatterns Zinc finger C2H2 type domain signature. 301 323 IPR013087 -
Stsc242121g00004 360 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Stsc242121g00004 360 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Stsc242121g00004 360 SUPERFAMILY beta-beta-alpha zinc fingers 289 330 IPR036236 -
Stsc242121g00004 360 MobiDBLite consensus disorder prediction 345 360 - -
Stsc242121g00004 360 FunFam SBDS, ribosome maturation factor 100 172 - -
Stsc242121g00004 360 MobiDBLite consensus disorder prediction 315 360 - -
Stsc242121g00004 360 Gene3D - 174 251 - -
Stsc242121g00004 360 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 242 IPR039100 -
Stsc242121g00004 360 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Stsc242121g00004 360 Gene3D - 1 96 IPR036786 -
Stsc242121g00004 360 NCBIfam ribosome assembly factor SBDS 13 225 IPR002140 GO:0042256
Stsc242121g00004 360 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Stsc242121g00004 360 FunFam SBDS, ribosome maturation factor 3 96 - -
Stsc242121g00004 360 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Stsc242121g00004 360 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Stsc242121g00004 360 Gene3D Classic Zinc Finger 290 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242121g00004 Stsc-Chr242121 17036 21093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242121g00004 27 360 C2H2 Transcription Factor Family AT1G43860 58.261 1.69e-141 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc242121g00004 SBDS_C 1.1e-27 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242121g00004 K14574 - gmx:100797497 610.142