Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242120g00009 ATGTCCAAGAAAAAGTCAAGCTTAGGTCGCCAGAAGATCCCAATTGAAAAAATCCCAAAAAAGAGTCACCTTCAAGTTACATTCTCTAAGCGGCGTTCTGGGCTATTCAAGAAAGCCAGCGAGCTTTGCACGCTTTGCGGCGTCGAGATAACCATCGTGGTTTTCTCGCCGGCCGATAAAGCCTTCTCCTTTGGCCATCCAGAGGTAGAATCTATCATCGATCGCTATATGGCTTTGAACCTTCCGCATGAATCCATGTCCAGCACTCAACAACTTGTTGAGGCGCATAGAAATGCCAACGTTCGTGATCTTAACATGCAACTGACTCAGCTTCTGAACCATTTGGAGATGGAGAAGAAGCGTGCAGAGGAGCTTGATCACGTGATAAAAGTGAGGCAGAGGCAGTTTTGGTGGGAAAGGCCTGTTGATAATCTTGGGTTTCATGAATTGCTGCAACTGAAAGCATCAATTGAGGAGCTCAAGAAGAATTTGTCAAAACATGTCAACAAAATCATCATCATGGACCAAACCAACATGCCTTCACAAATTATTGGGGTTAATAACAATCATAATAATAATAATATTAATATTAATAATTATGATCATCATGGCTTTGATAACAACAAATCTGATGCTGCTGCAGCCTTCAATGTTGCTTCCACAATGCCTCCTCCTCCTCCTAATAATGCTTATTACATGGGTTTTCGTCATGGGCATAAGGAAGGAATTTGTCAAGCTGCTATCAAGGATGAAGAAGTTGGAGAATACAAATCCAAAAAGTTGAGTCCATGGCTGAAAGCAGAAATGGTTGGGAGTGCCATCAAAGTGGAACACAAAAACCACACCAATTCCGAGGCAAAAAAGGAGACAAGATCAGAAGAGCAGCAAACCATCAGAAACTAA 903 0.4208 MSKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEITIVVFSPADKAFSFGHPEVESIIDRYMALNLPHESMSSTQQLVEAHRNANVRDLNMQLTQLLNHLEMEKKRAEELDHVIKVRQRQFWWERPVDNLGFHELLQLKASIEELKKNLSKHVNKIIIMDQTNMPSQIIGVNNNHNNNNININNYDHHGFDNNKSDAAAAFNVASTMPPPPPNNAYYMGFRHGHKEGICQAAIKDEEVGEYKSKKLSPWLKAEMVGSAIKVEHKNHTNSEAKKETRSEEQQTIRN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242120g00009 300 SUPERFAMILY SRF-like 9 91 IPR036879 GO:0003677|GO:0046983
Stsc242120g00009 300 Gene3D - 21 85 IPR036879 GO:0003677|GO:0046983
Stsc242120g00009 300 Coils Coil 98 125 - -
Stsc242120g00009 300 Gene3D - 87 192 - -
Stsc242120g00009 300 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Stsc242120g00009 300 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Stsc242120g00009 300 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Stsc242120g00009 300 Coils Coil 150 170 - -
Stsc242120g00009 300 MobiDBLite consensus disorder prediction 275 300 - -
Stsc242120g00009 300 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Stsc242120g00009 300 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Stsc242120g00009 300 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Stsc242120g00009 300 PANTHER MADS BOX PROTEIN 10 176 - -
Stsc242120g00009 300 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242120g00009 Stsc-Chr242120 30396 34444 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242120g00009 7 194 Type I MADS-box Gene Family AT2G24840 46.117 1.52e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc242120g00009 SRF-TF 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242120g00009 - - gmx:100781526 285.419