Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242120g00004 ATGGAGGCGTTGAAGCAGACAAAGAAAACCACAGGGCGTAAGAAAATTGAGATCAAGAAGCTTGTCAATGAAGCAAACAAGCAGGTAACCTTCTCGAAGAGGCGTGCTGGGATGTTCAAGAAAGCCAGTGAGCTATGCATATTATGCAATGCTTGCGTTGCCATTGTAGTGTTCTCGCCGGCCGACAAGTTGTTTTGCTTCGGAGATCCCAGCACAGAGGCAGTGGTCAACCGGTACCTCAAAGTAGAACCGGAGTTTGAGCCAGTAAAGACCTCGAAAGGTAAGAAGCCGGTGTCATGTGAAGAGCATAACAGGAAATACAACGAGGCGATGAAGGTGTTGGAGTTGGAAAAGAAGAAGAAGGCTGATGTTGAAGGTCTTGCTAAGGTTTGGGGAAGGGGGGAATGGTGGAACGAGGAGATTCATGAGATGAGTGTTGAGCAGTTGGAGCAGTTTTTGGTAGCCATTTTTGACTTAAGGAGTATACTTCTTAAAAGGGCTGCTGAAATCATGATGATGCACGGTATGTTATAG 534 0.4625 MEALKQTKKTTGRKKIEIKKLVNEANKQVTFSKRRAGMFKKASELCILCNACVAIVVFSPADKLFCFGDPSTEAVVNRYLKVEPEFEPVKTSKGKKPVSCEEHNRKYNEAMKVLELEKKKKADVEGLAKVWGRGEWWNEEIHEMSVEQLEQFLVAIFDLRSILLKRAAEIMMMHGML 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242120g00004 177 CDD MADS_MEF2_like 12 81 IPR033896 GO:0000977|GO:0045944
Stsc242120g00004 177 PANTHER MADS BOX PROTEIN 13 154 - -
Stsc242120g00004 177 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Stsc242120g00004 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 67 IPR002100 GO:0003677|GO:0046983
Stsc242120g00004 177 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Stsc242120g00004 177 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Stsc242120g00004 177 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Stsc242120g00004 177 SUPERFAMILY SRF-like 12 83 IPR036879 GO:0003677|GO:0046983
Stsc242120g00004 177 Gene3D - 23 88 IPR036879 GO:0003677|GO:0046983
Stsc242120g00004 177 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Stsc242120g00004 177 FunFam Agamous-like MADS-box protein AGL62 23 88 - -
Stsc242120g00004 177 Coils Coil 100 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242120g00004 Stsc-Chr242120 19109 19642 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242120g00004 8 171 Type I MADS-box Gene Family AT5G60440 38.462 1.01e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc242120g00004 SRF-TF 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242120g00004 - - gmx:100782074 211.075