Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242120g00001 ATGATCACAACATCAGGCAGGTTGTTTCCTTCTGGTTGCTGTCTCCTTTATATGTTAATCATCATATGGGACATTAAAACCTGCTACGCCCAGCAATATGATTTCATATATTATAATTGTCAGAATGATAAAGGTAACTACACAAGAAACAGCACCTACCACAAAAACCTCAACACCCTCTTGTCCACCCTCACTTCCGACACAAAAATAGACTACGGTTTCTACAACTCGTCGTACGGCCAAAACGGCGACAAAGTAAACGCCGTTGGGCTTTGCCAGGGAGACCTTAACCAAAACGACTGTCGAAGCTGTCTCAACGATTCCAGAATCGTTCTTCAAAGGCATTGCCCAAACCAGAAGGAAGCTGTAGGCTGGTACGATCATTGCATGCTCCAATACTCAAACCGCACCATCTTCGGCACTGGCTATGTCCAAAATACCCCTATGGTATACCTGGTTAACAAGGACAACGCAACCAATGTCGACGCCTTCAAACAAGAACGCGCAAGTTTGATGTCAGATCTGAGAAACAACGTGAGTGCAGCCGGTGACTCTGGCCGCAAATATGCGGCGGGAAGTGTCACCGGCACGGATTTTCAAACGATATATGGGGTTGTGCAGTGCACGCCGGATCTTTCTAGCCAAAAGTGTGATGAATGCTTGGAGGGTAACGTGGATGTAACTGTGAATGACGGAAAGAAAGGTGGGAGGGTTCTTACACCAAGATGTCATATTAGGTATGAAACCTACCGTTTCTTTCAGTTTCAGCCTTCTACTTCTGGTGATGCACTACTGCCTCCATCACTGTCCCCCAATAACAGGAATACTACTTCCTCCTCTTCTAATGGTCAAGCTGAAGATGTTGAAATTATGACGAACGGGTCATTGCAATTAGACTTTGATACCTTACGAGTTGCTACAAGTGATTTCTCAAATTCTAATAAATTGGGACAAGGTGGATTTGGAGCAGTTTATAAGGGTCAGCTCTCCAATGGACAAATGATTGCTGTCAAAAGGTTGTCAAAGGACTCTGGCCAAGGAGCTACGGAATTTAAGAATGAAGTGCTTTTATTGGCCAAACTTCAACATCGAAATTTAGTTAAACTCATTGGTTTTTGTTTGGAAGGAATTGAAAGGTTGCTGATTTATGAGTTTGTTTCTAACAAAAGTCTTGATTACTTCATATTTGATCCAATCAAGAGAGGACAATTGAATTGGACAAGTCGATATAAAATCATTGAAGGTGTTGCTCGAGCTCTTCTTTATCTTCATGAAGATTCTAGATTGCGTATTATACATCGCGATCTCAAAGCAAGTAATATCCTCTTAGATAATAACATGAATCCTAAGATAGCAGATTTTGGATTAGCAAAATTGTTTGGCACAGATCAAACTCAAGGAAATACTAATCGAATTGCTGGAACCTATGGATATATGGCACCTGAGTATGCAATGTACGGACAATTTTCAACAAAGTCAGATGTTTTCAGTTTTGGTGTAATAGTCCTTGAGATTGTGAGTGGCAAAAGACACATTGAGAATGGCAATGAAGAGAGTGTAGAGCAGCTACTAAGCTTTGTTTGGAGAAATTGGAAGGAGAGAACAGCTATAAATATCATAGATCCATCATTAAGCAACATTTCAGGAAATGAAGTTATGAGATGCATCCACGTTGGTTTACTTTGTGTTCAAGAGGATTTAGCAGATAGACCAAACATGAGTTCCATTGTACTGATGCTGGATAGTTATTCTGTAACTATGCCAACACCTTCAGAACCTGCCTTTTTTGTGGGGACTAGAACTAGAAGCCTTCCATTGTCAGACATACATTCAGGGCAGAATAATTCAACAACAACAACAAGTAGTGAGTCCACAACAAGTAAACCATCTCGTCGGGAATCAGAAAATGAGGCTTCCGTTACGGAGCTATATCCTCGATAA 1941 0.4116 MITTSGRLFPSGCCLLYMLIIIWDIKTCYAQQYDFIYYNCQNDKGNYTRNSTYHKNLNTLLSTLTSDTKIDYGFYNSSYGQNGDKVNAVGLCQGDLNQNDCRSCLNDSRIVLQRHCPNQKEAVGWYDHCMLQYSNRTIFGTGYVQNTPMVYLVNKDNATNVDAFKQERASLMSDLRNNVSAAGDSGRKYAAGSVTGTDFQTIYGVVQCTPDLSSQKCDECLEGNVDVTVNDGKKGGRVLTPRCHIRYETYRFFQFQPSTSGDALLPPSLSPNNRNTTSSSSNGQAEDVEIMTNGSLQLDFDTLRVATSDFSNSNKLGQGGFGAVYKGQLSNGQMIAVKRLSKDSGQGATEFKNEVLLLAKLQHRNLVKLIGFCLEGIERLLIYEFVSNKSLDYFIFDPIKRGQLNWTSRYKIIEGVARALLYLHEDSRLRIIHRDLKASNILLDNNMNPKIADFGLAKLFGTDQTQGNTNRIAGTYGYMAPEYAMYGQFSTKSDVFSFGVIVLEIVSGKRHIENGNEESVEQLLSFVWRNWKERTAINIIDPSLSNISGNEVMRCIHVGLLCVQEDLADRPNMSSIVLMLDSYSVTMPTPSEPAFFVGTRTRSLPLSDIHSGQNNSTTTTSSESTTSKPSRRESENEASVTELYPR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242120g00001 646 Gene3D Transferase(Phosphotransferase) domain 1 386 589 - -
Stsc242120g00001 646 FunFam Cysteine-rich receptor-like protein kinase 10 148 252 - -
Stsc242120g00001 646 ProSiteProfiles Protein kinase domain profile. 310 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242120g00001 646 Gene3D - 32 137 IPR038408 -
Stsc242120g00001 646 Gene3D - 146 252 IPR038408 -
Stsc242120g00001 646 SMART serkin_6 310 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242120g00001 646 Pfam Salt stress response/antifungal 40 135 IPR002902 -
Stsc242120g00001 646 Pfam Salt stress response/antifungal 157 250 IPR002902 -
Stsc242120g00001 646 ProSiteProfiles Gnk2-homologous domain profile. 146 252 IPR002902 -
Stsc242120g00001 646 CDD STKc_IRAK 316 581 - -
Stsc242120g00001 646 MobiDBLite consensus disorder prediction 606 646 - -
Stsc242120g00001 646 MobiDBLite consensus disorder prediction 263 286 - -
Stsc242120g00001 646 Pfam Protein kinase domain 311 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc242120g00001 646 FunFam cysteine-rich receptor-like protein kinase 10 386 587 - -
Stsc242120g00001 646 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Stsc242120g00001 646 Gene3D Phosphorylase Kinase; domain 1 272 385 - -
Stsc242120g00001 646 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 643 - -
Stsc242120g00001 646 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 138 - -
Stsc242120g00001 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Stsc242120g00001 646 ProSiteProfiles Gnk2-homologous domain profile. 35 138 IPR002902 -
Stsc242120g00001 646 SUPERFAMILY Protein kinase-like (PK-like) 297 606 IPR011009 -
Stsc242120g00001 646 MobiDBLite consensus disorder prediction 606 627 - -
Stsc242120g00001 646 FunFam Cysteine-rich receptor-like protein kinase 10 272 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242120g00001 Stsc-Chr242120 3855 8159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242120g00001 38 646 Receptor kinase-like Gene Family AT4G21410 46.557 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc242120g00001 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242120g00001 - - ahf:112776564 1030.78