Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242115g00006 ATGCCGGGATTAACGTGCAACGCTTGCAACAAAGAATTCAATGACGACACAGAGCAAAAGCTTCATTACAAGTCCGAGTGGCATCGCTACAACCTCAAGCGCAAGGTGGCTGGGGTCCCTGGGGTGACAGAAGCTCTGTTTCTGGCTAGACAATCTGCTCTTGCTCAAGAGAAGGATAAGTCTAATGAAACCCCTATGCTCTATAGCTGTCGTCTTTGTGGGAAGGCATATAAAAGTTCCAAGGCTCATGCTGAGCACCTTAAATCACGTGGTCATATCATGCGAGTATCCGAAGGAACTAGCCAATTAGATGAGAAGGCAATAATTAAGCCACTTCCTCAACGTGTTGCCAATAGGCCACCACCGAGAAGAGAGGTAGAAAACTCTGATAATGAAGAAAGTGAAGACGAATGGGAGGTGGTTGATCCTGAAGATGATTTGGTTAATGATGCTGCAAAGTCTATCACTGATTTGGACATGAATGATCATGATGACAATGCTGATATGGACGAAGACGATGATAGTTTTGAGGAGTTGGATCCATCATGTTGCTTTATGTGTGATCAAGAGCACAAGACAATTGAAAGCTGCATGGTTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCTTTCTAACTTATCTTGGACTTAAGGTCAAAAGGGACTTCATGTGTCTTTACTGCAATGACCGATGTTATCCTTTCAGCAGCTTGGAAGCAGTGAGGAAGCATATGGAAGCTAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGACGAAGAAGAAGCGGAGTTGGAAGAATTCTACGATTATAGCAGCAGTTATGTGGACGAGCAAGGCAAGCAGCTGGTTGTATCTGGTGATTCCGTTAACAATGTAGAATTTGGTGGTGGTGAGCTCATAATCAGCAAGAAAACGGAACGTGGAACATCAACCAGAACACTTGGTTCCCGGGAGTTTCTACGTTATTATCGTCAGAAACCTCGGCCTTCATCTGCAAGTAATATGGCCATTACTGCTGCGTTGGCTTCAAGGTATAGAGGCATGGGTTTGGCTACTGTTCAATCAAGGGAACAAATGGTGCGGATGAAAGTACTGAAGGAAATGAGCAAGTCAGGTGTGGAGCATATGCGCACAAAGATAGGAATGAAGAGCAATGTTATAAGGAACTTACCAAAGAATGTTCCATATTAG 1227 0.4368 MPGLTCNACNKEFNDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSALAQEKDKSNETPMLYSCRLCGKAYKSSKAHAEHLKSRGHIMRVSEGTSQLDEKAIIKPLPQRVANRPPPRREVENSDNEESEDEWEVVDPEDDLVNDAAKSITDLDMNDHDDNADMDEDDDSFEELDPSCCFMCDQEHKTIESCMVHMHKHHGFFIPDVEYLKDPKGFLTYLGLKVKRDFMCLYCNDRCYPFSSLEAVRKHMEAKSHCKVHYGDGDDEEEAELEEFYDYSSSYVDEQGKQLVVSGDSVNNVEFGGGELIISKKTERGTSTRTLGSREFLRYYRQKPRPSSASNMAITAALASRYRGMGLATVQSREQMVRMKVLKEMSKSGVEHMRTKIGMKSNVIRNLPKNVPY 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242115g00006 408 MobiDBLite consensus disorder prediction 130 144 - -
Stsc242115g00006 408 MobiDBLite consensus disorder prediction 110 144 - -
Stsc242115g00006 408 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Stsc242115g00006 408 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Stsc242115g00006 408 SMART c2h2final6 233 260 IPR013087 -
Stsc242115g00006 408 SMART c2h2final6 182 204 IPR013087 -
Stsc242115g00006 408 SMART c2h2final6 4 28 IPR013087 -
Stsc242115g00006 408 SMART c2h2final6 68 92 IPR013087 -
Stsc242115g00006 408 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Stsc242115g00006 408 PANTHER ZINC FINGER PROTEIN 622 2 407 IPR040025 -
Stsc242115g00006 408 SUPERFAMILY beta-beta-alpha zinc fingers 170 278 IPR036236 -
Stsc242115g00006 408 Pfam C2H2 type zinc-finger (2 copies) 184 285 IPR041661 -
Stsc242115g00006 408 SUPERFAMILY beta-beta-alpha zinc fingers 65 98 IPR036236 -
Stsc242115g00006 408 Gene3D Classic Zinc Finger 4 89 - -
Stsc242115g00006 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 92 IPR013087 -
Stsc242115g00006 408 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Stsc242115g00006 408 SMART ZnF_U1_5 65 99 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242115g00006 Stsc-Chr242115 30341 35113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242115g00006 1 408 C2H2 Transcription Factor Family AT4G31420 67.633 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc242115g00006 zf-C2H2_2 1.3e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242115g00006 K14816 - gmx:100796317 652.129