Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242115g00005 ATGGCGACACCGCCACCAATGGGGCCACTAGGAAACCCAATGTTTGACGGAGGACCGCCTCCGCCGCCGCCAACTCCAGGGACTGACATGACTGGAATTTGCTTCAGAGACCAGCTTTGGCTCAACACCTACCCACTGGATCGGAACCTGGTGTTTGATTACTTTGCTTTGTCCCCCTTTTATGATTGGAGCTGCAACAATGAGCAGCTTCGAATGCGCTCCGTCCACCCCCTCGACATCTCTCAGCTATCGAAGATGACAGGGATAGAATATATGCTCAGTGAAGTTTTGGAACCTCACCTTTTTGTAATTCGCAAGCAAAAGAGAGACAGCCCTGAGAAAGTTACACCAATGCTGGCGTACTACATCTTGGATGGTTCGATTTACCAGGCACCACAACTATGCAATGTTTTTGCTGCCCGAATTGGAAGGGCACTCCATTACATACAGAAAGCCTTTACTACAGCTGCCTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGACTGTGGTAACGGAATCAAAGGTTGCTAAGGAGACAATTGACTTAAAGGAAGTTAGGCGCGTGGACCAAATTCTTGCATCACTACAGCGCAAGCTACCGCCGGCCCCACCACCACCACCATTTCCAGAAGGATATGTTCCTCCTGCGGCAGGAGAAACCGATAAAGGCCCGGAAGCTCAAGGAGCAGAGTTGCAGCCTCCTTCTGGCGATCCCATCGTTGATCAAGGACCTGCAAAAAGAATGAAATTGATGTAA 768 0.4909 MATPPPMGPLGNPMFDGGPPPPPPTPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWSCNNEQLRMRSVHPLDISQLSKMTGIEYMLSEVLEPHLFVIRKQKRDSPEKVTPMLAYYILDGSIYQAPQLCNVFAARIGRALHYIQKAFTTAASKLEKIGYVDSENETVVTESKVAKETIDLKEVRRVDQILASLQRKLPPAPPPPPFPEGYVPPAAGETDKGPEAQGAELQPPSGDPIVDQGPAKRMKLM 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242115g00005 255 PANTHER MED-6-RELATED 16 254 IPR007018 GO:0003712|GO:0006357|GO:0016592
Stsc242115g00005 255 Pfam MED6 mediator sub complex component 33 158 IPR007018 GO:0003712|GO:0006357|GO:0016592
Stsc242115g00005 255 PIRSF MED6_meta/plant 19 254 IPR016820 GO:0003712|GO:0006357|GO:0016592
Stsc242115g00005 255 MobiDBLite consensus disorder prediction 202 217 - -
Stsc242115g00005 255 Gene3D Mediator complex, subunit Med6 27 156 IPR038566 -
Stsc242115g00005 255 MobiDBLite consensus disorder prediction 1 28 - -
Stsc242115g00005 255 FunFam Mediator of RNA polymerase II transcription subunit 6 27 156 - -
Stsc242115g00005 255 MobiDBLite consensus disorder prediction 200 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242115g00005 Stsc-Chr242115 25043 29466 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Stsc242115g00005 Med6 1.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242115g00005 K15128 - qsa:O6P43_027688 397.897