Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242115g00003 ATGACTGCCTTCAACTCCCTCAGATCGTCAAAGTTGGTCTCATGGAAACCTACCGGCAGGCTTCAGCAAACCCTAGCGAACTGCGTTGAGCGGCGGGGGAAGGCTTTGCATTCAGGAAAGGATTCAACCGTGAGATTGTGCCCGGGCTTCGCCGGCGAAGGAAGGTACTTCGATTACCGGAACAATTTGATTCCGGCGTCTATTGATTTTGTTCAGGTTTCGCCTCTCTGCACCACTCTCTGTAAAAATGGTTTCCGTCTTCGAACCGTGGAGCACTTGCTTTCTGCATTGGAGGCTACTGGTGTTGATAATTGCAGAATTGAGATTGAAAATTCGGATACTGAAGAGCATGATGCTGAGATTCCTATATTTGATGGGTCAGCAAAAGAATGGGTTGAAGCAGTGGAGGAAGTTGGTTTAAAGGTGGCAACAACTCATGATGGCAAACATTGTGAGAAAATGGCAGCACATGTGAATGAACCAGTGTATGTTTGGAGGGATGATTCTTTTGTTGCTGCATTTCCTTCAGAAGTGGGTAAAATAAGTTATGGCATCAGCTTTCCACAGGCACCAGCTATAGGTTCCCAATGGTTTTCTACACCATCCATGGACAATTTGTTTTATACCAGACAGATCGCTTTGGCAAGAACCTTCTGCATTTATGAGGAGATCGAGCAAATGCGTAACGTTGGACTTATCAAAGGGGGTTCTCTGGAAAATGCCATTGTATGCAGTGCTAGTGAAGGTTGGTTGAATCCACCTTTGCGTTTTGATGATGAACCATGCCGCCACAAGATCTTAGATCTCATTGGTGATCTTTCACTTTTTGCTCAGTTTGGGAATCAAGGACTCCCGGTGGCGCACATTGTAGCTTACAAGGGTGGTCATGCTTTGCATGCTGGTTTGGCACGCCAATTAATGAGGGAGTGA 930 0.4602 MTAFNSLRSSKLVSWKPTGRLQQTLANCVERRGKALHSGKDSTVRLCPGFAGEGRYFDYRNNLIPASIDFVQVSPLCTTLCKNGFRLRTVEHLLSALEATGVDNCRIEIENSDTEEHDAEIPIFDGSAKEWVEAVEEVGLKVATTHDGKHCEKMAAHVNEPVYVWRDDSFVAAFPSEVGKISYGISFPQAPAIGSQWFSTPSMDNLFYTRQIALARTFCIYEEIEQMRNVGLIKGGSLENAIVCSASEGWLNPPLRFDDEPCRHKILDLIGDLSLFAQFGNQGLPVAHIVAYKGGHALHAGLARQLMRE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242115g00003 309 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 20 309 IPR004463 GO:0008759|GO:0009245
Stsc242115g00003 309 Gene3D lpxc deacetylase, domain 2 156 309 IPR011334 GO:0008759|GO:0009245
Stsc242115g00003 309 Gene3D lpxc deacetylase, domain 1 20 147 IPR015870 GO:0008759|GO:0009245
Stsc242115g00003 309 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 2 308 IPR004463 GO:0008759|GO:0009245
Stsc242115g00003 309 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 308 IPR020568 -
Stsc242115g00003 309 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 141 IPR020568 -
Stsc242115g00003 309 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Stsc242115g00003 309 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242115g00003 Stsc-Chr242115 17078 23186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242115g00003 4 306 Carbohydrate Esterase AT1G25054 64.356 8.93e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242115g00003 K02535 - gmx:100814465 513.072