Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242114g00004 ATGGCATTGAGTACCTACTTGAATTGGGACACACTTCAAAATTCAATGATTTCAGAATTTTGCAACACAAATTTTCATGAACTAACTGCACCTGAAGAATATGCAGCAGACCATTATTACCACCAATATAATGATGAAAGTTTTTTGTTTCCAAACAACTTCTTTCTTGATCCATATTTTGACCTTAACACTGGCTTTCTCCACCCTGATATCTTCTCTTCTCATCAACCTCAGCCTAGTTGCACTCCTTCTTATGATCCCTTTATCACACTTAATGGTTTGTTTCAAACTGAATCCTTCAATTTCAACACACTTCCTCCATGTTCAAAACGACAAAAGTATTTCCATGAAGAGCAAGAACTTGAGCACCCTCCTCCCCTCGACCAGCTTACACCACCCAATTTTGTTGATGGGTTTATATCAAATTCATCCACTTTACTATCATCAGAAGAAGTAGCATTAGCAGAAGAACTACTGTTACCTACAACAACACCAGCAAAGGAGTTCATGGTTTCGGAACTTGCACAAGGTGATTTTTGCGTGGGAGTTAATGTTGAGAGTGAGAAGAAGTGTAGTGAAAGGATTATCTCAGCACAGAGCATAGCCGCAAGGGAAAGGAGGAGGAAGATCACAGAGAAAACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCCAAGATGAACACAGCTGAGATGCTTCATGCAGCTTTCAAGTATGTGAAGTACCTTCAAACCCAAGCTAGTATGCTTCAGCTTGTGAACACACTTCAGGAAGATGAGGTTGCTCCTCCAAGTGAAGATCTATGCACTCTTGTTGCTTCTCCATTTGTTCAAGAGAAGCTTTATTCTGAGGAACTATGCATTGTTCCTAAAGAGTTTGTTTCAACTTTGACAAGTCAACGTGATATTCGAACAAAGCCAACCATCGTTAAAGATCTTGAACAGTTGATTGAGACAAACAATGTGTAG 969 0.4004 MALSTYLNWDTLQNSMISEFCNTNFHELTAPEEYAADHYYHQYNDESFLFPNNFFLDPYFDLNTGFLHPDIFSSHQPQPSCTPSYDPFITLNGLFQTESFNFNTLPPCSKRQKYFHEEQELEHPPPLDQLTPPNFVDGFISNSSTLLSSEEVALAEELLLPTTTPAKEFMVSELAQGDFCVGVNVESEKKCSERIISAQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAFKYVKYLQTQASMLQLVNTLQEDEVAPPSEDLCTLVASPFVQEKLYSEELCIVPKEFVSTLTSQRDIRTKPTIVKDLEQLIETNNV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242114g00004 322 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 197 289 IPR045843 GO:0003700|GO:0006355
Stsc242114g00004 322 Pfam Helix-loop-helix DNA-binding domain 200 244 IPR011598 GO:0046983
Stsc242114g00004 322 Gene3D - 196 262 IPR036638 GO:0046983
Stsc242114g00004 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 257 IPR036638 GO:0046983
Stsc242114g00004 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Stsc242114g00004 322 SMART finulus 200 249 IPR011598 GO:0046983
Stsc242114g00004 322 CDD bHLH_AtbHLH_like 199 251 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242114g00004 Stsc-Chr242114 26210 28720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242114g00004 109 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 40.930 1.58e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc242114g00004 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242114g00004 - - aip:107610272 408.683