Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242114g00003 ATGGCTTCAACCCTTTTGAGAAGGACACTCTTGTGTGCTCGCTTGCTTCACCCTTCCCCTACTTTCCAACCTCAAACCTCACATATTCTCTCTTCCTTATCCACTAAGCGGCTGCTATTTAACGGAGCTGTCAAAACCCATACATTTCATAACCCAAAAATAATTGGTTNNNNNNNNNNTGCAGAAGCAAATTCAACAAGATCTGTATCAACAAATGAACCAGTTGTATCCGTTGATTGGCTTTATGATAACCTTAAGGATCCTTATGTGAAGGTGTTGGATGCATCGTGGTACATGCCAGATGAACAGAGGAACCCAATCCAAGAATATCAGGTTGCTCATATTCCTGGGGCCCTTTTCTTTGATGTTGACGGAATATCAGATCAAACTACAAAATTGCCACACATGTTGCCGTCAGAGGAAGCTTTTGCTGCCGCTGTTTCTGCTCTTGGCATAGAAAACAAAGATGATTTAGTTGTTTATGATGGAAAAGGACTATTTAGTGCTGCTCGTGTTTGGTGGATGTTCCGAGTTTTTGGTCACAATAGGATTTGGGTGTTAGATGGTGGCTTGCCAAGATGGCGTGCATCGGGTTATGATGTTGAATCCAGTGCCTCTAGCGATGCTATCCTTAAGGCTAGTGCTGCCAGTGAGGCTATTGAAAAAGTGTATCACGGGCAAGCGGTCGGCCCAATCACTTTCAAAACAAAGTTTCAGCCTCATCTTGTGTGGACACTTGATCAGGTTAAGAGAAACGTTGAAGAAAAGAGTCACCAACACATTGATGCTCGATCACAGGCCAGGTTTGATGGAGCTGCACCAGAACCAAGAAAGGGAATCCGAAGTGGTCATGTACCTGGCAGCAAATGCATTCCATTTCCCCAGTTGCTAGATGGTTCACAAGCATTGTTACCAGCAGATGAACTTAAGAAGCGATTCGAGCAAGCAGGCATCTCGTTGGAAAGCAATGTTGTGACTTCTTGTGGAACAGGCGTAACTGCTTGCATTCTCGCATTGGGTCTCCACCGTCTTGGAAAAACTGATGTTGCAGTTTACGATGGATCTTGGACAGAATGGGGAGCAAACCCTGATACTCATGTTGAAACCTCTTCTTCTTAA 1119 0.4397 MASTLLRRTLLCARLLHPSPTFQPQTSHILSSLSTKRLLFNGAVKTHTFHNPKIIGXXXXAEANSTRSVSTNEPVVSVDWLYDNLKDPYVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGISDQTTKLPHMLPSEEAFAAAVSALGIENKDDLVVYDGKGLFSAARVWWMFRVFGHNRIWVLDGGLPRWRASGYDVESSASSDAILKASAASEAIEKVYHGQAVGPITFKTKFQPHLVWTLDQVKRNVEEKSHQHIDARSQARFDGAAPEPRKGIRSGHVPGSKCIPFPQLLDGSQALLPADELKKRFEQAGISLESNVVTSCGTGVTACILALGLHRLGKTDVAVYDGSWTEWGANPDTHVETSSS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242114g00003 372 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 73 205 IPR036873 -
Stsc242114g00003 372 FunFam Sulfurtransferase 239 370 - -
Stsc242114g00003 372 SMART rhod_4 244 365 IPR001763 -
Stsc242114g00003 372 SMART rhod_4 76 200 IPR001763 -
Stsc242114g00003 372 ProSitePatterns Rhodanese C-terminal signature. 349 359 IPR001307 GO:0004792
Stsc242114g00003 372 MobiDBLite consensus disorder prediction 256 286 - -
Stsc242114g00003 372 ProSiteProfiles Rhodanese domain profile. 254 368 IPR001763 -
Stsc242114g00003 372 ProSitePatterns Rhodanese signature 1. 110 121 IPR001307 GO:0004792
Stsc242114g00003 372 Gene3D - 239 366 IPR036873 -
Stsc242114g00003 372 CDD TST_Repeat_1 75 198 - -
Stsc242114g00003 372 PANTHER THIOSULFATE SULFERTANSFERASE 70 370 IPR045078 GO:0016783
Stsc242114g00003 372 Gene3D - 68 210 IPR036873 -
Stsc242114g00003 372 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 247 369 IPR036873 -
Stsc242114g00003 372 ProSiteProfiles Rhodanese domain profile. 90 203 IPR001763 -
Stsc242114g00003 372 CDD TST_Repeat_2 245 361 - -
Stsc242114g00003 372 FunFam Sulfurtransferase 68 210 - -
Stsc242114g00003 372 Pfam Rhodanese-like domain 246 361 IPR001763 -
Stsc242114g00003 372 Pfam Rhodanese-like domain 77 196 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242114g00003 Stsc-Chr242114 17238 23269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242114g00003 65 372 Sulfurtransferasese or Rhodanese AT1G79230 78.247 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242114g00003 K01011 - gmx:100798053 587.03