Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242109g00004 ATGTCCTCAACCACCACCTCTCACGGCGGCGACTTCGAAACTCCCACAATGGACAAGGAGTCCTCCGAGCTCCTCCAAACCATATCGGAGCACGGCGGCTACGCCTACGTCAGAATGGCATCGCAGGCGGCTGCCGGAGACATACGCGCCGCGGAGGCGGCGCTGGAGATGGCGTGGGAGCAGCTGCACTCAGGTCCGTGGCAGTCGGTGCTTCCGGTGTGGCGCGACGCTTACTCGATGGCGTGCCTCCACGTGGCAAGGCACCACAACGGTAACGGCGAGTTCAAGGAGGCGCTTAGGGTTCTTGACTTGGGGATCATCATGGGAGGGACGCTCCTCCGAAAGGATTTGGACTCTGCGATCGAGAAGGTTTCAGAGAGAGCCAAGAGTTCCCGTAGGGTTTCTGAGGGAAGCTTCCAAGAAGGTTCGGTCAACAACTCCGACCAACGGAGGCTTGTTCATCCGGAATTTCATGTGTCTCAGGTGCTCCAACTTTTACCTGTCAAGTCCCTTTCTTCTAAGGTTGTGGAGAAGAAATCTGGCTTGTCGTTGGATAAGTTCTTGAAAGATCATTACCTGGCTGCTACACCGGTTATTATCAGTGATTGTATGGCTCACTGGCCAGCCAAGATGAAATGGAACAACATAGATTATTTGCTGAGAGTTGCTGGCGATCGCACAGTTCCTGTTGAGGTTGGCAAGAACTACTTATGTACAGACTGGAAGCAAGAGCTAATCACATTTTCAGAGTTACTTCAGCGCATAAAATCCAATGGAGGTTCTCCTGGGGGTCCTACATATCTTGCCCAGCATCCATTATTTGATCAAATAAATGAGCTTCGGAAAGATATCTTCATTCCTGACTATTGTTTTGCCGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACTCCATTACACCATGACCCACATCATAACATACTGGCTCAGGTTGTTGGGAAGAAGTACATTAGGCTTTACTCAGCATCTTTGTCTGAGGAACTTCACCCCTACTCGGAGACGATGCGTACCAATTCCAGCCAGGTTGACTTAGATGACATAGATGAAGGGAAGTTTCCTAAAGTGCAAGACTTGGAATTTATAGACTGTATTTTAGAGGAAGGTGATATGCTATATATCCCACCAAAGTGGTGGCACTATGTGCGATCTCTAACTACAAGTTTCTCAGTTAGCTTCTGGTGGAGTGAGGGTGAATATTCAGATACATCCTAA 1254 0.4944 MSSTTTSHGGDFETPTMDKESSELLQTISEHGGYAYVRMASQAAAGDIRAAEAALEMAWEQLHSGPWQSVLPVWRDAYSMACLHVARHHNGNGEFKEALRVLDLGIIMGGTLLRKDLDSAIEKVSERAKSSRRVSEGSFQEGSVNNSDQRRLVHPEFHVSQVLQLLPVKSLSSKVVEKKSGLSLDKFLKDHYLAATPVIISDCMAHWPAKMKWNNIDYLLRVAGDRTVPVEVGKNYLCTDWKQELITFSELLQRIKSNGGSPGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASLSEELHPYSETMRTNSSQVDLDDIDEGKFPKVQDLEFIDCILEEGDMLYIPPKWWHYVRSLTTSFSVSFWWSEGEYSDTS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242109g00004 417 MobiDBLite consensus disorder prediction 1 21 - -
Stsc242109g00004 417 SUPERFAMILY Clavaminate synthase-like 178 409 - -
Stsc242109g00004 417 ProSiteProfiles JmjC domain profile. 275 417 IPR003347 -
Stsc242109g00004 417 Gene3D Cupin 174 409 - -
Stsc242109g00004 417 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 76 411 - -
Stsc242109g00004 417 FunFam lysine-specific demethylase JMJ30 175 408 - -
Stsc242109g00004 417 Pfam Cupin-like domain 186 409 IPR041667 -
Stsc242109g00004 417 SMART cupin_9 266 416 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242109g00004 Stsc-Chr242109 28585 32298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242109g00004 170 408 Acyl Lipid Metabolism Gene Families AT3G45880 24.242 1.13e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc242109g00004 Cupin_8 5.3e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242109g00004 K24444 - gmx:100813075 664.07