Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc242109g00003 ATGGGACTAATTGGGGGACTTTTTACATCTCTTGTCAGTGGTGGATCCGCGATTTTGTTTTCGCCGATGACATTTATCAAGAAACCACTCTTATGGCTTGAAACTATGAGCAAATATCAAGCAACTCATAGTGCTGGCCCAAACTTTGCCTTTGAGTTGGTGATTAGAAGGTTGGAGTCTGACAAAGACAAGCTCCGGAATTTAGACCTTTCATCCATGATTTTTCTTATGGTTGCTGCCGAACCGGTGAGACAAAAGACTCTGAAAAGATTTGTTGAGCTGACAAGTCCCTTTGGATTGTCCGAAAAGGTGATGGCTCCTGGATATGGCTTGGCAGAAAACTGTGTCTTTGTTAGCTGCGCATTCGGGGAGCGAAAGCCTATCATTGTTGATTGGCAAGGAAGAGTTTGTTGTGGATATACTCAACAAGAGAATGAAGATATTGACATAAGAATAGTTGATCCGGAGACATGTGAAGAGCTTCAAGAGGATGGAAAGGAGGGAGAGGTTTGGATTAGTAGTCCAAGTGCTGGAATTGGATACTGGGGAAGGGAAGAATTGAGTCAGAACACTTTCAAGAACAAGCTTCCCAATCATCCTGGTCGTTACTACACTAGAACAGGAGATTTGGGAAGAATCATAGATGGAAATCTATTCATCACTGGAAGAATCAAGGATCTCATCATTGTAGCTGGAAGGAATATCTACTCTGCAGATGTTGAGAAGACAGTTGAGACTTCATCAGAATTGCTTCGTCCCGGTTGCTGTGCTGTCATTGGTGTCCCTGAGGAAATCCTATCAGCAAAGGGGATTTCCATGCCAGATGGCTCTGATCAGGTTGGCTTGGTTGTGATTGCAGAGGTTCGAGATGGCAAACCAGTTGGCATTGATGTTATTGAGAAGATTAGGACTCGGGTGGTTGAAGAACATGGAGTTGTCATTGCTTCTGTCAAGCTGGTTAAGCCTAGAACAATCAGCAAAACAACATCTGGAAAAATCAAGAGATTTGAATGTATCAAGCAGTTTGCAGACGAATCACTGAACTTGGTGCCTCAAGGTCCACAGACTCTATTGAAGAAAAGTTTGCTGAGATCATATACTACCGGAACATGCGGCGAAGGGAATACTCCGAGGCCCCGGCTAGTAAGAAGAACACTTGCAGCTAGCAAAAGGATCAGTAAGAATGATATTGTGGAATTCTTGAAGGGCCTTATTTCTGAGCAGACTGGAATTACAATCAACAACATCTCAGTTACAGATAACCTCACATCCTATGGAATTGATTCAATTGGTGTGGTTAAAGCAACTCAAAAGCTCTCTGATTTCCTCGGAACACCAGTTGCAGCCATAGATGTTTTCACTGCAACAAACATTCTTGAGTTGGCTAACTTCTCTGATGATCTGCTATCCAAGACTCAGCCTCAGCTTTCAAGCAAACCAACCAATGTTCCAGAAGATGAAACCTTTTCTACTGAACTGGTTGAAGAGGTATCTACGTCCAAGCGATTTGGTATCCATTTACTTCAACTTATGGCACTTATTTATGTTTCCATCATGCTAGCCTCACCAGCTTATATGTGCATCAATGCTTTCCTAAGCTTCATCCCAAGTTTCAGCATATCAGTAGATGGAATTCCCTGGTCAAATTATTTGGTTTCCCTTGCTTTAGCACCAATTGCTTGGATGCTTTGCATTGCTGCTACTTGCATTTGCATTTCATTATTTGGAAATTCTTTCTTGAGGCCAAACTATGCTCTTGCCTCCGAAATCTCCATGTATTCGATGGACTTTGTTAAGTGGTGGGCATTATATAAGGTCCAAGAGACTTCTTCTAAAGTTCTAGCAGTTCACCTCAGAGGAACCGTGTTTCTGAAGTACTGGTTTGAGATGCTTGGTGCAAGAATTGGATCTTCAGTGTTGCTTGATACAGTTGACATCACCGATCCTAGTCTTGTTTTGATTGGAGATGAAGCTGTCATTGCAGAAGGTGTTTTGGTTCAAAGTCATGATGTAAAAAGTGGAATTCTAAGTCTCCGCGCTATCAAAATCGGGAAAAGTTCCTCAATTGGACCTTATGCAGTTATTCAAAAAGGAAGTGTTATTGGAGAAGGTGCTGAGGTGCAGGCCTTGCAAAAGGTTGAAGGAGGACAGCATGTGCCCAAATCTGCTAAGCTTAATAATGTTGATCAGAATGCAGAAGTTCCTAGCATTTACCACTTTATTGGGATCTATCTTGTTGGCTTTCTCAGTTCACTGGCTGCAGCTATTGCCTACTTCGTATACATATGGTTCTCCAATAAATCTCCATCATTCCTGCACTTCTCATTTGTTTGCATATGTGGTGCATTCCACTGGATCCCCTTCACCATTATTGCATATGCTACCATGTTCTCTGATGTACCATCAAATCCAATAACCTTTGCCATTTCATTTGCTGGCGCCTACTTGCTTCATGGTGTCGTGCTCATCGCTCTCAGCAGCGCTTTCTCTAGCCTCCTCATCATGTCAAGTACAAAGCAAAACCAATACAGAACTTGGCTTAAGCAGCAAATCACCATGTCCTCCCACCTTAGATTCGCGAAGCTTCTCTCAGGAACAGGAGCCTTCTGCGATAATTCAGTTGTTGGGAGTCAAAGCCTGATTCTCCCAGGTTCCCTTGTCCAAAAGAATGTCATTCTAGGTGCACTTTCAGTTGCTCCAATGAACTCTATACTCCAGGAGGGTGGTGTTTATATTGGATCACAATCCCAACCTGTTATCAGAAACTCAATGAATAATTCTGATAAAAATAGAGAAGAGATGGACACTGAATGCAAGGAAAAGGCTAGCAATTTGGCCACCACATTGCTTAAAAAGGACTCAGAAAAAGTTACCTTGACCAGAAAATGGTATCAAAGTTTTTCAGTACTCTTCATTCAACCCTTGATGCAAACACTTCTGCCTTATTTTTTGGTTGGTTTATCAGTTTTTGCACCTTTGGACCTTCTTGTTCACCAAAAGAATTCCATGAAACTTTCTTTGCATTGGTGTTTCCCTTTGATTTGGGTTCTCTCTGGTGCTTTAGCTGCATTGGCATGTGTTGTAGCCAAAAGGGTTCTTGTAGGAAAGAACAAATCTGGAGACAAAGTTCCCATATGGAGCATAAGGATCATCATGGACAGCACTTGGCAAGCTATAAGAACACTTATTGGGGACTTTTTCATGGACATGACAAATGGCTCATATTTTCTTGTGCTGTATATGAAGCTGATGGGTGCAGATGTTGAAATGGACCATGAAGTTTATGTGGATAGCAATGGAGCATTGCTGAATCCTGAAATGGTGAAGATTGAGAGAGGTGGCTGTGTGGGGAAAGAAGCATTGCTGTTTGGACACATATATGAAGGTGAAGAAGGAGGAATGGTGAAGTTTGGAGAGATCAAAATTGGAGAAGATGGTTTTGTTGGTAGCAGAGCTATTGCCATGCCTGGTGTGCAGTTGGAGAATGAAGGAAATCTTGGTGCTCTATCTATTGCCATGAAAGAAGAGATCATAAGGTCAAGGTAA 3546 0.4213 MGLIGGLFTSLVSGGSAILFSPMTFIKKPLLWLETMSKYQATHSAGPNFAFELVIRRLESDKDKLRNLDLSSMIFLMVAAEPVRQKTLKRFVELTSPFGLSEKVMAPGYGLAENCVFVSCAFGERKPIIVDWQGRVCCGYTQQENEDIDIRIVDPETCEELQEDGKEGEVWISSPSAGIGYWGREELSQNTFKNKLPNHPGRYYTRTGDLGRIIDGNLFITGRIKDLIIVAGRNIYSADVEKTVETSSELLRPGCCAVIGVPEEILSAKGISMPDGSDQVGLVVIAEVRDGKPVGIDVIEKIRTRVVEEHGVVIASVKLVKPRTISKTTSGKIKRFECIKQFADESLNLVPQGPQTLLKKSLLRSYTTGTCGEGNTPRPRLVRRTLAASKRISKNDIVEFLKGLISEQTGITINNISVTDNLTSYGIDSIGVVKATQKLSDFLGTPVAAIDVFTATNILELANFSDDLLSKTQPQLSSKPTNVPEDETFSTELVEEVSTSKRFGIHLLQLMALIYVSIMLASPAYMCINAFLSFIPSFSISVDGIPWSNYLVSLALAPIAWMLCIAATCICISLFGNSFLRPNYALASEISMYSMDFVKWWALYKVQETSSKVLAVHLRGTVFLKYWFEMLGARIGSSVLLDTVDITDPSLVLIGDEAVIAEGVLVQSHDVKSGILSLRAIKIGKSSSIGPYAVIQKGSVIGEGAEVQALQKVEGGQHVPKSAKLNNVDQNAEVPSIYHFIGIYLVGFLSSLAAAIAYFVYIWFSNKSPSFLHFSFVCICGAFHWIPFTIIAYATMFSDVPSNPITFAISFAGAYLLHGVVLIALSSAFSSLLIMSSTKQNQYRTWLKQQITMSSHLRFAKLLSGTGAFCDNSVVGSQSLILPGSLVQKNVILGALSVAPMNSILQEGGVYIGSQSQPVIRNSMNNSDKNREEMDTECKEKASNLATTLLKKDSEKVTLTRKWYQSFSVLFIQPLMQTLLPYFLVGLSVFAPLDLLVHQKNSMKLSLHWCFPLIWVLSGALAALACVVAKRVLVGKNKSGDKVPIWSIRIIMDSTWQAIRTLIGDFFMDMTNGSYFLVLYMKLMGADVEMDHEVYVDSNGALLNPEMVKIERGGCVGKEALLFGHIYEGEEGGMVKFGEIKIGEDGFVGSRAIAMPGVQLENEGNLGALSIAMKEEIIRSR 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc242109g00003 1181 Gene3D Hexapeptide repeat proteins 631 725 - -
Stsc242109g00003 1181 ProSitePatterns Phosphopantetheine attachment site. 424 439 IPR006162 -
Stsc242109g00003 1181 Pfam AMP-binding enzyme 1 230 IPR000873 -
Stsc242109g00003 1181 SUPERFAMILY Trimeric LpxA-like enzymes 1034 1174 IPR011004 -
Stsc242109g00003 1181 Gene3D - 1 223 IPR042099 -
Stsc242109g00003 1181 SMART Phosphopantetheine attachment site 398 469 IPR020806 GO:0031177
Stsc242109g00003 1181 Gene3D - 225 352 IPR045851 -
Stsc242109g00003 1181 ProSiteProfiles Carrier protein (CP) domain profile. 395 469 IPR009081 -
Stsc242109g00003 1181 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 1 870 - -
Stsc242109g00003 1181 Pfam Phosphopantetheine attachment site 400 464 IPR009081 -
Stsc242109g00003 1181 Gene3D - 384 466 IPR036736 -
Stsc242109g00003 1181 SUPERFAMILY Acetyl-CoA synthetase-like 1 348 - -
Stsc242109g00003 1181 SUPERFAMILY Trimeric LpxA-like enzymes 619 722 IPR011004 -
Stsc242109g00003 1181 SUPERFAMILY ACP-like 393 485 IPR036736 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc242109g00003 Stsc-Chr242109 17549 21608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc242109g00003 5 263 Monolignol Biosynthesis Gene Families AT1G20480 24.615 1.39e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc242109g00003 - - adu:107477067 1993.78